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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024466.1-P Field mustard mitochondrion 90.98 90.98
CDY29234 Canola mitochondrion 90.66 90.52
CDY36482 Canola mitochondrion 90.19 90.05
GSMUA_Achr7P00810_001 Banana cytosol 85.28 89.98
HORVU0Hr1G013850.1 Barley cytosol 75.32 86.86
AT5G66760.1 Thale cress mitochondrion 87.03 86.75
PGSC0003DMT400038576 Potato mitochondrion 86.23 86.51
Solyc02g085350.2.1 Tomato mitochondrion 86.08 86.49
KRH69929 Soybean mitochondrion 86.23 85.96
Zm00001d007966_P001 Maize mitochondrion 84.02 85.78
KXG34367 Sorghum mitochondrion 83.86 85.62
EER90804 Sorghum mitochondrion 83.7 85.32
TraesCS5B01G414900.1 Wheat mitochondrion, plastid 83.54 85.02
KRH28665 Soybean mitochondrion 84.49 84.76
TraesCS5A01G411200.1 Wheat golgi, mitochondrion 83.23 84.7
Os07t0134800-01 Rice mitochondrion 84.02 84.29
KRH76805 Soybean mitochondrion 84.02 84.29
TraesCS5D01G420100.1 Wheat mitochondrion 78.8 84.26
TraesCS2A01G255100.1 Wheat plastid 82.44 84.17
TraesCS2D01G255500.1 Wheat mitochondrion, plastid 82.44 84.17
HORVU2Hr1G061040.10 Barley mitochondrion 69.78 83.36
TraesCS2B01G267100.1 Wheat mitochondrion 74.84 82.84
VIT_04s0023g01650.t01 Wine grape mitochondrion 85.92 81.04
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 28.8 80.53
Zm00001d018758_P001 Maize mitochondrion 75.47 76.56
Zm00001d029250_P001 Maize cytosol 8.39 71.62
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 13.92 68.75
Zm00001d038502_P001 Maize cytosol 16.61 48.17
Zm00001d025385_P001 Maize cytosol 9.18 44.62
Zm00001d029316_P001 Maize cytosol 11.55 37.82
AT5G14760.1 Thale cress plastid 29.27 28.42
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100MapMan:2.3.6.1.1
Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40EntrezGene:816359UniProt:A0A178VRF6ProteinID:AAD15493.1
ProteinID:AEC06769.1EMBL:AK119142ArrayExpress:AT2G18450EnsemblPlantsGene:AT2G18450RefSeq:AT2G18450TAIR:AT2G18450
RefSeq:AT2G18450-TAIR-GEnsemblPlants:AT2G18450.1TAIR:AT2G18450.1Unigene:At.39995EMBL:BT005938InterPro:FAD-binding_2
InterPro:FAD/NAD-bd_sfInterPro:FRD_SDH_FAD_BSInterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CGO:GO:0000104GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0005749GO:GO:0006091GO:GO:0006099
GO:GO:0006121GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0008177GO:GO:0009055
GO:GO:0009061GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0016627GO:GO:0022900
GO:GO:0045273GO:GO:0050660GO:GO:0055114InterPro:IPR027477InterPro:IPR036188RefSeq:NP_179435.1
ProteinID:OAP08358.1PFAM:PF00890PFAM:PF02910PIRSF:PIRSF000171PO:PO:0000256PO:PO:0000262
PO:PO:0000293PO:PO:0009005ScanProsite:PS00504PANTHER:PTHR11632PANTHER:PTHR11632:SF51UniProt:Q9ZPX5
Symbol:SDH1-2SUPFAM:SSF46977SUPFAM:SSF51905SUPFAM:SSF56425InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_GnegTIGRFAMs:TIGR01812TIGRFAMs:TIGR01816UniParc:UPI0000060DBESEG:seg:
Description
SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
Coordinates
chr2:-:7997344..8000825
Molecular Weight (calculated)
69367.2 Da
IEP (calculated)
6.208
GRAVY (calculated)
-0.315
Length
632 amino acids
Sequence
(BLAST)
001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.