CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93643
EES01682
KXG24249
OQU79812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	KXG24249	AT1G08480.1	12970493
AT5G66760.1	EER93643	AT1G47420.1	12970493
AT5G66760.1	EES01682	AT1G47420.1	12970493
AT5G66760.1	OQU79812	AT3G27380.1	12970493
AT5G66760.1	OQU79812	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34367	Sorghum	mitochondrion	95.0	95.15
GSMUA_Achr7P00810_001	Banana	cytosol	91.13	94.32
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	93.06	92.91
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	92.74	92.59
TraesCS5D01G420100.1	Wheat	mitochondrion	88.06	92.39
HORVU0Hr1G013850.1	Barley	cytosol	81.45	92.15
Os07t0134800-01	Rice	mitochondrion	93.55	92.06
Solyc02g085350.2.1	Tomato	mitochondrion	90.16	88.87
PGSC0003DMT400038576	Potato	mitochondrion	90.16	88.73
Bra012100.1-P	Field mustard	mitochondrion	89.19	88.62
CDY49839	Canola	mitochondrion	89.68	88.53
CDY30754	Canola	mitochondrion	89.52	88.52
CDY53847	Canola	mitochondrion	89.52	88.52
CDY57124	Canola	mitochondrion	89.52	88.52
CDX81369	Canola	mitochondrion	89.19	88.06
AT5G66760.1	Thale cress	mitochondrion	89.68	87.7
KRH28665	Soybean	mitochondrion	89.03	87.62
KRH76805	Soybean	mitochondrion	88.87	87.46
KRH69929	Soybean	mitochondrion	89.35	87.38
Bra024466.1-P	Field mustard	mitochondrion	87.1	85.44
CDY36482	Canola	mitochondrion	86.94	85.15
CDY29234	Canola	mitochondrion	86.77	84.99
VIT_04s0023g01650.t01	Wine grape	mitochondrion	90.81	84.03
AT2G18450.1	Thale cress	mitochondrion	85.32	83.7
KXG35242	Sorghum	cytosol, mitochondrion, plastid	5.48	56.67
EES04469	Sorghum	plastid	30.48	28.9

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EntrezGene:8083945	UniProt:C5WZ45	EnsemblPlants:EER90804
ProteinID:EER90804	ProteinID:EER90804.1	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000104	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0005749	GO:GO:0006091	GO:GO:0006099	GO:GO:0006121	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009061	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	InterPro:IPR027477
InterPro:IPR036188	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632
PANTHER:PTHR11632:SF51	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	EnsemblPlantsGene:SORBI_3001G072000	SUPFAM:SSF46977	SUPFAM:SSF51905
SUPFAM:SSF56425	unigene:Sbi.12583	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812
TIGRFAMs:TIGR01816	UniParc:UPI0001A82277	RefSeq:XP_002463806.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:5477234..5483153

Molecular Weight (calculated)

67949.7 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.291

Length

620 amino acids

Sequence
(BLAST)

001: MWRGCVSRGL RKVKAAASAS RLFSTSSSYT VVDHTYDAVV VGAGGAGLRA AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMSE DDWRWHMYDT
101: VKGSDWLGDQ DSIQYMCREA PKAVIELENY GLPFSRTEDG KIYQRAFGGQ SLDFGKGGQA YRCACAADRT GHAMLHTLYG QAMKHNTQFF VEYFALDLLM
201: DNEGICQGVI ALNMEDGTLH RFRAANTILA TGGYGRAYFS ATSAHTCTGD GNAMVARAGL PLQDLEFVQF HPTGIYGAGC LITEGSRGEG GILRNSEGER
301: FMERYAPTAK DLASRDVVSR SMTMEIREGR GVGPLKDHIY LHLNHLPPEV LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT NYHGEVLHIK
401: GDDPDAVVPG LMAAGEAACA SVHGANRLGA NSLLDIVVFG RACANRVAEI SKPGEKQKPL GKGVGENTIA WLDKLRNANG SLPTSKIRLN MQRVMQNNAA
501: VFRTQETLEE GCELISKAWE SFHDVKISDR SLIWNSDLIE TIELENLLIN ACITMYSAEA RKESRGAHAR EDFSTRDDES WMKHTLGYWE NEKVRLAYRP
601: VHMNTLDDEV QSFPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.