Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 10
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
26371478
unclear: 26455813 mitochondrion: 26471654 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26471654
doi
Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400038576 | Potato | mitochondrion | 98.89 | 98.73 |
GSMUA_Achr7P00810_001 | Banana | cytosol | 88.55 | 92.99 |
HORVU0Hr1G013850.1 | Barley | cytosol | 79.33 | 91.06 |
Zm00001d007966_P001 | Maize | mitochondrion | 89.19 | 90.63 |
CDY57124 | Canola | mitochondrion | 90.3 | 90.59 |
KXG34367 | Sorghum | mitochondrion | 89.03 | 90.47 |
AT5G66760.1 | Thale cress | mitochondrion | 90.94 | 90.22 |
EER90804 | Sorghum | mitochondrion | 88.87 | 90.16 |
CDY49839 | Canola | mitochondrion | 89.98 | 90.13 |
CDX81369 | Canola | mitochondrion | 89.98 | 90.13 |
CDY30754 | Canola | mitochondrion | 89.83 | 90.11 |
CDY53847 | Canola | mitochondrion | 89.67 | 89.95 |
Bra012100.1-P | Field mustard | mitochondrion | 89.19 | 89.9 |
KRH69929 | Soybean | mitochondrion | 90.46 | 89.75 |
KRH76805 | Soybean | mitochondrion | 89.83 | 89.68 |
TraesCS2D01G255500.1 | Wheat | mitochondrion, plastid | 88.08 | 89.5 |
TraesCS2A01G255100.1 | Wheat | plastid | 88.08 | 89.5 |
TraesCS5B01G414900.1 | Wheat | mitochondrion, plastid | 88.24 | 89.37 |
KRH28665 | Soybean | mitochondrion | 89.51 | 89.37 |
Os07t0134800-01 | Rice | mitochondrion | 89.35 | 89.21 |
TraesCS5A01G411200.1 | Wheat | golgi, mitochondrion | 87.92 | 89.05 |
TraesCS5D01G420100.1 | Wheat | mitochondrion | 83.47 | 88.83 |
TraesCS2B01G267100.1 | Wheat | mitochondrion | 80.13 | 88.27 |
HORVU2Hr1G061040.10 | Barley | mitochondrion | 73.93 | 87.9 |
Bra024466.1-P | Field mustard | mitochondrion | 88.08 | 87.66 |
CDY36482 | Canola | mitochondrion | 87.76 | 87.2 |
CDY29234 | Canola | mitochondrion | 87.76 | 87.2 |
AT2G18450.1 | Thale cress | mitochondrion | 86.49 | 86.08 |
VIT_04s0023g01650.t01 | Wine grape | mitochondrion | 91.26 | 85.67 |
Zm00001d008855_P001 | Maize | cytosol, mitochondrion, peroxisome | 30.52 | 84.96 |
Zm00001d018758_P001 | Maize | mitochondrion | 80.6 | 81.38 |
Zm00001d029250_P001 | Maize | cytosol | 9.06 | 77.03 |
Zm00001d014927_P001 | Maize | cytosol, mitochondrion, peroxisome | 15.1 | 74.22 |
Zm00001d038502_P001 | Maize | cytosol | 17.81 | 51.38 |
Zm00001d025385_P001 | Maize | cytosol | 9.38 | 45.38 |
Zm00001d029316_P001 | Maize | cytosol | 12.4 | 40.41 |
Solyc12g014530.1.1 | Tomato | plastid | 29.25 | 30.41 |
Solyc01g056580.2.1 | Tomato | cytosol | 18.28 | 29.79 |
Protein Annotations
Description
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4BB47]
Coordinates
chr2:-:48270135..48277365
Molecular Weight (calculated)
69167.9 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.364
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRCVSRGLR ASSNRSISGG GHFRRLFSSQ TNVGGSSYTV VDHTYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMTED
101: DWRWHMYDTV KGSDWLGDQD AIQYMCREAP KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HALLHTLYGQ AMKHNTQFFV
201: EYFALDLLMN SDGSCQGVIA LNMEDGTLHR FRAANTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG
301: ILRNSEGERF MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPEVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN
401: YHGQVVTKNG DDPDAVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVAEIQ KPGAEQKPLE KDAGERTIAW LDKIRNSNGS LPTSKIRLDM
501: QRVMQNNAAV FRTQETLEEG CQLIDKTWES FHDVQLKDRG LIWNTDLIET IELENLLINA CITMHSAEAR KESRGAHARE DFTKRDDEKW MKHTIGYWED
601: EKVRLEYRPV HMNTLDDEVE SFPPKARVY
101: DWRWHMYDTV KGSDWLGDQD AIQYMCREAP KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HALLHTLYGQ AMKHNTQFFV
201: EYFALDLLMN SDGSCQGVIA LNMEDGTLHR FRAANTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG
301: ILRNSEGERF MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPEVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN
401: YHGQVVTKNG DDPDAVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVAEIQ KPGAEQKPLE KDAGERTIAW LDKIRNSNGS LPTSKIRLDM
501: QRVMQNNAAV FRTQETLEEG CQLIDKTWES FHDVQLKDRG LIWNTDLIET IELENLLINA CITMHSAEAR KESRGAHARE DFTKRDDEKW MKHTIGYWED
601: EKVRLEYRPV HMNTLDDEVE SFPPKARVY
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.