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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 10
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
BaCelLo:mitochondrion
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 26371478
unclear: 26455813
mitochondrion: 26471654
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26471654 doi
O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez
Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038576 Potato mitochondrion 98.89 98.73
GSMUA_Achr7P00810_001 Banana cytosol 88.55 92.99
HORVU0Hr1G013850.1 Barley cytosol 79.33 91.06
Zm00001d007966_P001 Maize mitochondrion 89.19 90.63
CDY57124 Canola mitochondrion 90.3 90.59
KXG34367 Sorghum mitochondrion 89.03 90.47
AT5G66760.1 Thale cress mitochondrion 90.94 90.22
EER90804 Sorghum mitochondrion 88.87 90.16
CDY49839 Canola mitochondrion 89.98 90.13
CDX81369 Canola mitochondrion 89.98 90.13
CDY30754 Canola mitochondrion 89.83 90.11
CDY53847 Canola mitochondrion 89.67 89.95
Bra012100.1-P Field mustard mitochondrion 89.19 89.9
KRH69929 Soybean mitochondrion 90.46 89.75
KRH76805 Soybean mitochondrion 89.83 89.68
TraesCS2D01G255500.1 Wheat mitochondrion, plastid 88.08 89.5
TraesCS2A01G255100.1 Wheat plastid 88.08 89.5
TraesCS5B01G414900.1 Wheat mitochondrion, plastid 88.24 89.37
KRH28665 Soybean mitochondrion 89.51 89.37
Os07t0134800-01 Rice mitochondrion 89.35 89.21
TraesCS5A01G411200.1 Wheat golgi, mitochondrion 87.92 89.05
TraesCS5D01G420100.1 Wheat mitochondrion 83.47 88.83
TraesCS2B01G267100.1 Wheat mitochondrion 80.13 88.27
HORVU2Hr1G061040.10 Barley mitochondrion 73.93 87.9
Bra024466.1-P Field mustard mitochondrion 88.08 87.66
CDY36482 Canola mitochondrion 87.76 87.2
CDY29234 Canola mitochondrion 87.76 87.2
AT2G18450.1 Thale cress mitochondrion 86.49 86.08
VIT_04s0023g01650.t01 Wine grape mitochondrion 91.26 85.67
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 30.52 84.96
Zm00001d018758_P001 Maize mitochondrion 80.6 81.38
Zm00001d029250_P001 Maize cytosol 9.06 77.03
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 15.1 74.22
Zm00001d038502_P001 Maize cytosol 17.81 51.38
Zm00001d025385_P001 Maize cytosol 9.38 45.38
Zm00001d029316_P001 Maize cytosol 12.4 40.41
Solyc12g014530.1.1 Tomato plastid 29.25 30.41
Solyc01g056580.2.1 Tomato cytosol 18.28 29.79
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100MapMan:2.3.6.1.1
Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40InterPro:FAD-binding_2InterPro:FAD/NAD-bd_sfInterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CGO:GO:0000104GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0005743GO:GO:0005749GO:GO:0006091GO:GO:0006099GO:GO:0006121GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0008177GO:GO:0009055GO:GO:0009061GO:GO:0009987
GO:GO:0016020GO:GO:0016491GO:GO:0016627GO:GO:0022900GO:GO:0050660GO:GO:0055114
InterPro:IPR027477InterPro:IPR036188UniProt:K4BB47PFAM:PF00890PFAM:PF02910PIRSF:PIRSF000171
ScanProsite:PS00504PANTHER:PTHR11632PANTHER:PTHR11632:SF51SUPFAM:SSF46977SUPFAM:SSF51905SUPFAM:SSF56425
EnsemblPlantsGene:Solyc02g085350.2EnsemblPlants:Solyc02g085350.2.1InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwdInterPro:Succ_Dhase_FrdA_GnegTIGRFAMs:TIGR01812
TIGRFAMs:TIGR01816UniParc:UPI0002769055SEG:seg:::
Description
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4BB47]
Coordinates
chr2:-:48270135..48277365
Molecular Weight (calculated)
69167.9 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.364
Length
629 amino acids
Sequence
(BLAST)
001: MWRCVSRGLR ASSNRSISGG GHFRRLFSSQ TNVGGSSYTV VDHTYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMTED
101: DWRWHMYDTV KGSDWLGDQD AIQYMCREAP KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HALLHTLYGQ AMKHNTQFFV
201: EYFALDLLMN SDGSCQGVIA LNMEDGTLHR FRAANTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG
301: ILRNSEGERF MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPEVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN
401: YHGQVVTKNG DDPDAVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVAEIQ KPGAEQKPLE KDAGERTIAW LDKIRNSNGS LPTSKIRLDM
501: QRVMQNNAAV FRTQETLEEG CQLIDKTWES FHDVQLKDRG LIWNTDLIET IELENLLINA CITMHSAEAR KESRGAHARE DFTKRDDEKW MKHTIGYWED
601: EKVRLEYRPV HMNTLDDEVE SFPPKARVY
Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.