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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 10
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 mitochondrion: 14983062
cytosol: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
msms PMID: 14983062 doi
Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400007733
PGSC0003DMT400015105
PGSC0003DMT400020707
PGSC0003DMT400021489
PGSC0003DMT400032862
PGSC0003DMT400039927
PGSC0003DMT400064279

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66760.1 PGSC0003DMT400007733 AT1G08480.1 12970493
AT5G66760.1 PGSC0003DMT400015105 AT1G08480.1 12970493
AT5G66760.1 PGSC0003DMT400020707 AT1G47420.1 12970493
AT5G66760.1 PGSC0003DMT400039927 AT1G47420.1 12970493
AT5G66760.1 PGSC0003DMT400032862 AT3G27380.1 12970493
AT5G66760.1 PGSC0003DMT400064279 AT3G27380.1 12970493
AT5G66760.1 PGSC0003DMT400021489 AT4G32210.1 12970493
AT5G66760.1 PGSC0003DMT400021489 AT5G09600.1 12970493
AT5G66760.1 PGSC0003DMT400032862 AT5G40650.1 12970493
AT5G66760.1 PGSC0003DMT400064279 AT5G40650.1 12970493
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g085350.2.1 Tomato mitochondrion 98.73 98.89
GSMUA_Achr7P00810_001 Banana cytosol 88.57 93.16
HORVU0Hr1G013850.1 Barley cytosol 79.68 91.61
CDY57124 Canola mitochondrion 90.63 91.07
AT5G66760.1 Thale cress mitochondrion 91.43 90.85
CDX81369 Canola mitochondrion 90.48 90.76
CDY49839 Canola mitochondrion 90.48 90.76
Zm00001d007966_P001 Maize mitochondrion 89.05 90.63
CDY30754 Canola mitochondrion 90.16 90.59
KXG34367 Sorghum mitochondrion 88.89 90.47
CDY53847 Canola mitochondrion 90.0 90.43
Bra012100.1-P Field mustard mitochondrion 89.52 90.38
EER90804 Sorghum mitochondrion 88.73 90.16
KRH76805 Soybean mitochondrion 90.0 90.0
KRH69929 Soybean mitochondrion 90.32 89.75
KRH28665 Soybean mitochondrion 89.68 89.68
TraesCS5B01G414900.1 Wheat mitochondrion, plastid 88.1 89.37
TraesCS2D01G255500.1 Wheat mitochondrion, plastid 87.78 89.34
TraesCS2A01G255100.1 Wheat plastid 87.78 89.34
TraesCS5A01G411200.1 Wheat golgi, mitochondrion 87.78 89.05
Os07t0134800-01 Rice mitochondrion 89.05 89.05
TraesCS5D01G420100.1 Wheat mitochondrion 83.33 88.83
TraesCS2B01G267100.1 Wheat mitochondrion 79.84 88.09
Bra024466.1-P Field mustard mitochondrion 88.25 87.97
HORVU2Hr1G061040.10 Barley mitochondrion 73.81 87.9
CDY29234 Canola mitochondrion 87.94 87.52
CDY36482 Canola mitochondrion 87.94 87.52
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 30.95 86.28
AT2G18450.1 Thale cress mitochondrion 86.51 86.23
VIT_04s0023g01650.t01 Wine grape mitochondrion 91.43 85.97
Zm00001d018758_P001 Maize mitochondrion 80.48 81.38
Zm00001d029250_P001 Maize cytosol 9.05 77.03
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 15.24 75.0
Zm00001d038502_P001 Maize cytosol 17.94 51.83
Zm00001d025385_P001 Maize cytosol 9.52 46.15
Zm00001d029316_P001 Maize cytosol 12.38 40.41
PGSC0003DMT400033442 Potato mitochondrion 29.21 28.53
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100EntrezGene:102604123
MapMan:2.3.6.1.1Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40InterPro:FAD-binding_2InterPro:FAD/NAD-bd_sf
InterPro:FRD_SDH_FAD_BSInterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0005743GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0008177
GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0016627GO:GO:0022900GO:GO:0050660
GO:GO:0055114InterPro:IPR027477InterPro:IPR036188UniProt:M1B744PFAM:PF00890PFAM:PF02910
EnsemblPlantsGene:PGSC0003DMG400014901PGSC:PGSC0003DMG400014901EnsemblPlants:PGSC0003DMT400038576PIRSF:PIRSF000171ScanProsite:PS00504PANTHER:PTHR11632
PANTHER:PTHR11632:SF51SUPFAM:SSF46977SUPFAM:SSF51905SUPFAM:SSF56425InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_GnegTIGRFAMs:TIGR01812TIGRFAMs:TIGR01816UniParc:UPI00029562E4RefSeq:XP_006340609.1SEG:seg
Description
Succinate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400014901]
Coordinates
chr2:-:40562655..40569648
Molecular Weight (calculated)
69280.1 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.365
Length
630 amino acids
Sequence
(BLAST)
001: MWRCVSRGLR ASSNRSISGG GGHFRRLFSS QTNVGGSSYT IVDHTYDAVV VGAGGAGLRA AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMTE
101: DDWRWHMYDT VKGSDWLGDQ DAIQYMCREA PKAVIELENY GLPFSRTEDG KIYQRAFGGQ SLDFGKGGQA YRCACAADRT GHALLHTLYG QAMKHNTQFF
201: VEYFALDLLM NSDGSCQGVI ALNMEDGTLH RFRAANTILA TGGYGRAYFS ATSAHTCTGD GNAMVARAGL PLQDLEFVQF HPTGIYGAGC LITEGSRGEG
301: GILRNSEGER FMERYAPTAK DLASRDVVSR SMTMEIREGR GVGPLKDHIY LHLNHLPPEV LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT
401: NYHGQVVTKK GDDPDAVIPG LMAAGEAACA SVHGANRLGA NSLLDIVVFG RACANRVAEI QKPGEEQKPL EKDAGERTIA WLDKIRNSNG SLPTSNIRLN
501: MQRVMQNNAA VFRTQETLEE GCQLIDKTWE SFHDVQLKDR GLIWNTDLIE TIELENLLIN ACITMHSAEA RKESRGAHAR EDFTKRDDEK WMKHTIGFWE
601: DEKVRLEYRP VHMNTLDDEV ESFPPKARVY
Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.