Factsheet for Zm00001d029316_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029250_P001	Maize	cytosol	34.2	89.19
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	30.05	45.31
Zm00001d038502_P001	Maize	cytosol	33.16	29.36
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	29.02	24.78
HORVU2Hr1G061040.10	Barley	mitochondrion	40.93	14.93
TraesCS2B01G267100.1	Wheat	mitochondrion	40.41	13.66
GSMUA_Achr7P00810_001	Banana	cytosol	40.41	13.02
TraesCS2A01G255100.1	Wheat	plastid	40.93	12.76
Os07t0134800-01	Rice	mitochondrion	41.45	12.7
Zm00001d007966_P001	Maize	mitochondrion	40.41	12.6
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	40.41	12.6
Solyc02g085350.2.1	Tomato	mitochondrion	40.41	12.4
PGSC0003DMT400038576	Potato	mitochondrion	40.41	12.38
Zm00001d018758_P001	Maize	mitochondrion	39.9	12.36
Bra012100.1-P	Field mustard	mitochondrion	39.9	12.34
CDY53847	Canola	mitochondrion	39.9	12.28
CDY57124	Canola	mitochondrion	39.9	12.28
CDY30754	Canola	mitochondrion	39.9	12.28
CDY49839	Canola	mitochondrion	39.9	12.26
KRH76805	Soybean	mitochondrion	39.9	12.22
KRH28665	Soybean	mitochondrion	39.9	12.22
KRH69929	Soybean	mitochondrion	39.9	12.15
AT5G66760.1	Thale cress	mitochondrion	39.9	12.15
CDX81369	Canola	mitochondrion	39.38	12.1
VIT_04s0023g01650.t01	Wine grape	mitochondrion	41.45	11.94
Bra024466.1-P	Field mustard	mitochondrion	38.86	11.87
CDY36482	Canola	mitochondrion	38.86	11.85
CDY29234	Canola	mitochondrion	38.86	11.85
AT2G18450.1	Thale cress	mitochondrion	37.82	11.55
Zm00001d015183_P002	Maize	plastid	15.54	4.49
Zm00001d025385_P001	Maize	cytosol	1.55	2.31

Protein Annotations

EnsemblPlants:Zm00001d029316_P001	EnsemblPlants:Zm00001d029316_T001	EnsemblPlantsGene:Zm00001d029316	Gene3D:3.90.700.10	InterPro:FAD-binding_2	InterPro:IPR027477
InterPro:Succ_DH/fumarate_Rdtase_cat_sf	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF00890	ProteinID:ONL98429.1	SUPFAM:SSF56425
UniParc:UPI0008442603	UniProt:A0A1D6K478	MapMan:35.1	:	:	:

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 mitochondrial

Coordinates

chr1:-:65770171..65774414

Molecular Weight (calculated)

21398.4 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.315

Length

193 amino acids

Sequence
(BLAST)

001: MPGCREGSLH FQIWKHEHDR SCSAGLDVRR HCCFEAQLHV LQADPATFTS DLEDAEDFAA WSKEALSQAA AEMQGFSCES DKAWVAQAEM QDKELDIIEM
101: AMYGDVIRPG KQCRCRIVAE VLGPLKDHIY LHLNHLPPEV LKERLPGISE TDAIFAGVDV TKEPIPVLPT VHYNMGGIPS PNELPWGGSG YQG

Best Arabidopsis Sequence Match ( AT1G18680.1 )
(BLAST)

001: MGSSFSASFT NSTTAAAVPP PSPPSSPSRS NVKSNGEERP RFFDGKAKNK CWANADIVPG RHPERWRKDV AGNIVCKRFG NCNGCLCFEY DHIVPYSKGG
101: ESIAENCQIL QTRVNRFKSA QENVDATTLK SYSCGLQFTD KELDVIEMAV YGDVLRPGKE CRCKTVAELL GQSKSKDGKA ACELPS

Arabidopsis Description

F6A14.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9T9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.