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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89352
KRG94380
KRH05703
KRH07075
KRH15341
KRH25379
KRH56129

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66760.1 KRG89352 AT1G08480.1 12970493
AT5G66760.1 KRH05703 AT1G47420.1 12970493
AT5G66760.1 KRH15341 AT1G47420.1 12970493
AT5G66760.1 KRG94380 AT3G27380.1 12970493
AT5G66760.1 KRH07075 AT3G27380.1 12970493
AT5G66760.1 KRH25379 AT4G32210.1 12970493
AT5G66760.1 KRH56129 AT4G32210.1 12970493
AT5G66760.1 KRH25379 AT5G09600.1 12970493
AT5G66760.1 KRH56129 AT5G09600.1 12970493
AT5G66760.1 KRG94380 AT5G40650.1 12970493
AT5G66760.1 KRH07075 AT5G40650.1 12970493
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH28665 Soybean mitochondrion 98.57 98.57
GSMUA_Achr7P00810_001 Banana cytosol 86.98 91.49
KRH69929 Soybean mitochondrion 92.06 91.48
PGSC0003DMT400038576 Potato mitochondrion 90.0 90.0
Solyc02g085350.2.1 Tomato mitochondrion 89.68 89.83
EER90804 Sorghum mitochondrion 87.46 88.87
KXG34367 Sorghum mitochondrion 87.3 88.85
CDY57124 Canola mitochondrion 88.41 88.84
Zm00001d007966_P001 Maize mitochondrion 87.14 88.69
Bra012100.1-P Field mustard mitochondrion 87.78 88.62
CDX81369 Canola mitochondrion 88.25 88.53
CDY30754 Canola mitochondrion 88.1 88.52
CDY53847 Canola mitochondrion 88.1 88.52
CDY49839 Canola mitochondrion 88.1 88.38
AT5G66760.1 Thale cress mitochondrion 88.73 88.17
HORVU0Hr1G013850.1 Barley cytosol 76.67 88.14
TraesCS2A01G255100.1 Wheat plastid 86.51 88.05
TraesCS2D01G255500.1 Wheat mitochondrion, plastid 86.35 87.88
Os07t0134800-01 Rice mitochondrion 87.14 87.14
TraesCS2B01G267100.1 Wheat mitochondrion 78.57 86.69
TraesCS5B01G414900.1 Wheat mitochondrion, plastid 85.4 86.63
TraesCS5A01G411200.1 Wheat golgi, mitochondrion 85.08 86.31
TraesCS5D01G420100.1 Wheat mitochondrion 80.79 86.13
HORVU2Hr1G061040.10 Barley mitochondrion 72.06 85.82
Bra024466.1-P Field mustard mitochondrion 85.24 84.97
CDY29234 Canola mitochondrion 84.92 84.52
CDY36482 Canola mitochondrion 84.6 84.2
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 30.16 84.07
AT2G18450.1 Thale cress mitochondrion 84.29 84.02
VIT_04s0023g01650.t01 Wine grape mitochondrion 89.21 83.88
Zm00001d018758_P001 Maize mitochondrion 79.05 79.94
Zm00001d029250_P001 Maize cytosol 8.89 75.68
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 15.08 74.22
KRH75678 Soybean plastid 14.76 57.76
Zm00001d038502_P001 Maize cytosol 17.62 50.92
Zm00001d025385_P001 Maize cytosol 9.37 45.38
Zm00001d029316_P001 Maize cytosol 12.22 39.9
KRH56611 Soybean plastid 28.57 27.82
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100EntrezGene:100803020
MapMan:2.3.6.1.1Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40EMBL:ACUP02000643InterPro:FAD-binding_2
InterPro:FAD/NAD-bd_sfInterPro:FRD_SDH_FAD_BSInterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CEnsemblPlantsGene:GLYMA_01G175600GO:GO:0000104
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0005749GO:GO:0006091
GO:GO:0006099GO:GO:0006121GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0008177
GO:GO:0009055GO:GO:0009061GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0016627
GO:GO:0022900GO:GO:0050660GO:GO:0055114UniProt:I1J8V9InterPro:IPR027477InterPro:IPR036188
EnsemblPlants:KRH76805ProteinID:KRH76805ProteinID:KRH76805.1PFAM:PF00890PFAM:PF02910PIRSF:PIRSF000171
ScanProsite:PS00504PANTHER:PTHR11632PANTHER:PTHR11632:SF51MetaCyc:PWY-3781MetaCyc:PWY-4302MetaCyc:PWY-561
MetaCyc:PWY-5690MetaCyc:PWY-6728MetaCyc:PWY-6969MetaCyc:PWY-7254MetaCyc:PWY-7279SUPFAM:SSF46977
SUPFAM:SSF51905SUPFAM:SSF56425InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwdInterPro:Succ_Dhase_FrdA_GnegTIGRFAMs:TIGR01812
TIGRFAMs:TIGR01816UniParc:UPI0002336DC0SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:+:51229738..51236465
Molecular Weight (calculated)
69305.0 Da
IEP (calculated)
6.658
GRAVY (calculated)
-0.325
Length
630 amino acids
Sequence
(BLAST)
001: MWRCIARGLR GPASTRSTSN HSLGSHFYRF FSSGANSSYT VVDHTYDAVV VGAGGAGLRA AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMTE
101: DDWRWHMYDT VKGSDWLGDQ DAIQYMCREA PKAVIELENY GLPFSRTEDG KIYQRAFGGQ SLNYGKGGQA YRCACAADRT GHALLHTLYG QAMRHNTQFF
201: VEYFALDLLI NSDGTCQGVI ALNMEDGTLH RFQAASTILA TGGYGRAYFS ATSAHTCTGD GNAMVARAGI PLEDLEFVQF HPTGIYGAGC LITEGSRGEG
301: GILRNSEGER FMERYAPTAK DLASRDVVSR AMTMEIREGR GVGPLKDHIY LHLNHLPPDV LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT
401: NHYGEVVTIK GDNPDAVVSG LMAAGETACA SVHGANRLGA NSLLDIVVFG RACANRVAEI RRPGEKQKPL EKDAGQRTIA WLDKLRNSNG SLPTSQIRLN
501: MQRVMQNNAA VFRTQETLEE GCQLIDKTWE SFHDVQVKDR SLIWNSDLIE TIELENLLIN ACITMYSAEA RKESRGAHAR EDFKVRDDGN WMKHTVGFWE
601: NEKVRLDYRP VHLNVLDDEV ESFPPKARVY
Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.