Factsheet for Zm00001d025385_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	24.62	25.0
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	39.23	22.57
Zm00001d038502_P001	Maize	cytosol	26.15	15.6
TraesCS2B01G267100.1	Wheat	mitochondrion	48.46	11.03
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	48.46	10.18
GSMUA_Achr7P00810_001	Banana	cytosol	46.15	10.02
Zm00001d007966_P001	Maize	mitochondrion	47.69	10.02
TraesCS2A01G255100.1	Wheat	plastid	47.69	10.02
AT5G66760.1	Thale cress	mitochondrion	47.69	9.78
Bra012100.1-P	Field mustard	mitochondrion	46.92	9.78
CDY57124	Canola	mitochondrion	46.92	9.73
CDY30754	Canola	mitochondrion	46.92	9.73
CDY53847	Canola	mitochondrion	46.92	9.73
CDY49839	Canola	mitochondrion	46.92	9.71
CDX81369	Canola	mitochondrion	46.92	9.71
KRH28665	Soybean	mitochondrion	46.15	9.52
Os07t0134800-01	Rice	mitochondrion	46.15	9.52
PGSC0003DMT400038576	Potato	mitochondrion	46.15	9.52
Solyc02g085350.2.1	Tomato	mitochondrion	45.38	9.38
KRH76805	Soybean	mitochondrion	45.38	9.37
AT2G18450.1	Thale cress	mitochondrion	44.62	9.18
KRH69929	Soybean	mitochondrion	44.62	9.15
Bra024466.1-P	Field mustard	mitochondrion	43.08	8.86
CDY29234	Canola	mitochondrion	43.08	8.85
VIT_04s0023g01650.t01	Wine grape	mitochondrion	45.38	8.81
CDY36482	Canola	mitochondrion	42.31	8.69
Zm00001d018758_P001	Maize	mitochondrion	36.15	7.54
Zm00001d015183_P002	Maize	plastid	26.92	5.24
Zm00001d029250_P001	Maize	cytosol	2.31	4.05
Zm00001d029316_P001	Maize	cytosol	2.31	1.55

Protein Annotations

EnsemblPlants:Zm00001d025385_P001	EnsemblPlants:Zm00001d025385_T001	EnsemblPlantsGene:Zm00001d025385	Gene3D:3.50.50.60	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF00890	ProteinID:AQK43647.1	SUPFAM:SSF51905
UniParc:UPI0008451FF2	UniProt:A0A1D6J6U7	MapMan:35.1	:	:	:

Description

succinate dehydrogenase6 succinate dehydrogenase6

Coordinates

chr10:+:116620582..116622211

Molecular Weight (calculated)

13618.8 Da

IEP (calculated)

4.520

GRAVY (calculated)

0.235

Length

130 amino acids

Sequence
(BLAST)

001: MGGIPTNYHG EVVDIKGDNP DAVIPGLMAA GEAACASVHG ANRLGANSLL DIVVLAELVQ TGEAMKGLDI RKVLEAPKEV KCVPMKNVLE PGDIPTLAEL
101: GLTTPPGMAQ VQLERFLAFS TMMRSVVEPV

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.