Factsheet for Zm00001d008855_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029250_P001	Maize	cytosol	23.45	71.62
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	35.84	63.28
Zm00001d025385_P001	Maize	cytosol	22.57	39.23
Zm00001d038502_P001	Maize	cytosol	36.28	37.61
HORVU2Hr1G061040.10	Barley	mitochondrion	87.17	37.24
TraesCS2B01G267100.1	Wheat	mitochondrion	88.5	35.03
Zm00001d007966_P001	Maize	mitochondrion	90.71	33.12
GSMUA_Achr7P00810_001	Banana	cytosol	87.17	32.89
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	88.5	32.31
TraesCS2A01G255100.1	Wheat	plastid	88.5	32.31
Os07t0134800-01	Rice	mitochondrion	87.17	31.27
AT5G66760.1	Thale cress	mitochondrion	87.61	31.23
PGSC0003DMT400038576	Potato	mitochondrion	86.28	30.95
Solyc02g085350.2.1	Tomato	mitochondrion	84.96	30.52
Bra012100.1-P	Field mustard	mitochondrion	84.07	30.45
CDY57124	Canola	mitochondrion	84.07	30.3
CDY30754	Canola	mitochondrion	84.07	30.3
CDY53847	Canola	mitochondrion	84.07	30.3
CDY49839	Canola	mitochondrion	84.07	30.25
KRH28665	Soybean	mitochondrion	84.07	30.16
KRH76805	Soybean	mitochondrion	84.07	30.16
KRH69929	Soybean	mitochondrion	84.51	30.13
CDX81369	Canola	mitochondrion	83.63	30.1
VIT_04s0023g01650.t01	Wine grape	mitochondrion	86.28	29.1
Zm00001d029316_P001	Maize	cytosol	24.78	29.02
Bra024466.1-P	Field mustard	mitochondrion	80.53	28.8
AT2G18450.1	Thale cress	mitochondrion	80.53	28.8
CDY29234	Canola	mitochondrion	80.53	28.75
CDY36482	Canola	mitochondrion	80.09	28.59
Zm00001d018758_P001	Maize	mitochondrion	77.88	28.25
Zm00001d015183_P002	Maize	plastid	24.34	8.23

Protein Annotations

Gene3D:1.20.58.100	MapMan:2.3.6.1.1	Gene3D:3.50.50.60	Gene3D:3.90.700.10	UniProt:A0A1D6FGD3	ProteinID:AQK90906.1
InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:Fum_R/Succ_DH_flav-like_C_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	PFAM:PF00890
PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf
UniParc:UPI000842508A	EnsemblPlantsGene:Zm00001d008855	EnsemblPlants:Zm00001d008855_P001	EnsemblPlants:Zm00001d008855_T001	:	:

Description

succinate dehydrogenase3 succinate dehydrogenase3

Coordinates

chr8:+:22739651..22740658

Molecular Weight (calculated)

24554.7 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.117

Length

226 amino acids

Sequence
(BLAST)

001: MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYF HLNHLPPEVL KERLPGISEI AAIFAGVDVT KEPIPVLPTV HYNMGGIPMN YHGEVVDIKG
101: DNPDVVIPGL MAAGEAAYAS VHGANRLGAN SLLDIVVFGR ACANRVADIS KPSEKQKPLE KDAGEKTIAW LDKLRNANGS LPTSEIRLNM QRVMQNNAVV
201: FRTQETLEEG IAGALCVVPF TTIMST

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.