Factsheet for Bra024466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29234	Canola	mitochondrion	99.68	99.53
CDY36482	Canola	mitochondrion	99.21	99.05
GSMUA_Achr7P00810_001	Banana	cytosol	86.55	91.32
AT2G18450.1	Thale cress	mitochondrion	90.98	90.98
Bra012100.1-P	Field mustard	mitochondrion	87.82	88.94
PGSC0003DMT400038576	Potato	mitochondrion	87.97	88.25
Solyc02g085350.2.1	Tomato	mitochondrion	87.66	88.08
HORVU0Hr1G013850.1	Barley	cytosol	75.95	87.59
EER90804	Sorghum	mitochondrion	85.44	87.1
KXG34367	Sorghum	mitochondrion	85.13	86.91
Os07t0134800-01	Rice	mitochondrion	86.55	86.83
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	85.28	86.8
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	85.28	86.8
Zm00001d007966_P001	Maize	mitochondrion	84.97	86.75
KRH69929	Soybean	mitochondrion	86.87	86.59
TraesCS5D01G420100.1	Wheat	mitochondrion	80.85	86.46
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	84.34	86.11
TraesCS2A01G255100.1	Wheat	plastid	84.02	85.78
KRH28665	Soybean	mitochondrion	84.97	85.24
KRH76805	Soybean	mitochondrion	84.97	85.24
HORVU2Hr1G061040.10	Barley	mitochondrion	70.73	84.5
TraesCS2B01G267100.1	Wheat	mitochondrion	76.11	84.24
VIT_04s0023g01650.t01	Wine grape	mitochondrion	87.34	82.39
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	28.8	80.53
Zm00001d018758_P001	Maize	mitochondrion	76.9	78.01
Zm00001d029250_P001	Maize	cytosol	8.7	74.32
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	13.77	67.97
Zm00001d038502_P001	Maize	cytosol	16.46	47.71
Zm00001d025385_P001	Maize	cytosol	8.86	43.08
Zm00001d029316_P001	Maize	cytosol	11.87	38.86
Bra008739.1-P	Field mustard	cytosol, plastid	29.11	28.35

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EnsemblPlantsGene:Bra024466	EnsemblPlants:Bra024466.1	EnsemblPlants:Bra024466.1-P
InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0008177	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016627
GO:GO:0022900	GO:GO:0045273	GO:GO:0050660	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188
UniProt:M4E6R1	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632
PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI000253EF2C	SEG:seg	:

Description

AT2G18450 (E=0.0) SDH1-2 | SDH1-2; succinate dehydrogenase

Coordinates

chrA06:+:15964650..15968677

Molecular Weight (calculated)

69553.2 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.365

Length

632 amino acids

Sequence
(BLAST)

001: MWRFVSRRVR AASRRSESDG ALISSQVSTR FFSARSTTGD YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: TEDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLDFGKGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRE GRGAGPMKDH IYLHLNHLPP DVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT VRGDDPDSIV PGLMAAGEAA SASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLR PLENDAGEKS IEWLHRLRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVK DKSLIWNSDL VETMELENLL INACITMHSA EARKESRGAH AREDFTKRDD ENWMKHTLGY
601: WEEGKVKLEY RPVHMNTLDD EVDTFPPKAR VY

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.