Factsheet for Bra012100.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009392.1-P
Bra014079.1-P
Bra018622.1-P
Bra028469.1-P
Bra030413.1-P
Bra030729.1-P
Bra040955.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Bra018622.1-P	AT1G08480.1	12970493
AT5G66760.1	Bra030729.1-P	AT1G08480.1	12970493
AT5G66760.1	Bra014079.1-P	AT1G47420.1	12970493
AT5G66760.1	Bra030413.1-P	AT1G47420.1	12970493
AT5G66760.1	Bra040955.1-P	AT1G47420.1	12970493
AT5G66760.1	Bra028469.1-P	AT3G27380.1	12970493
AT5G66760.1	Bra009392.1-P	AT4G32210.1	12970493
AT5G66760.1	Bra009392.1-P	AT5G09600.1	12970493
AT5G66760.1	Bra028469.1-P	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53847	Canola	mitochondrion	99.84	99.36
CDY30754	Canola	mitochondrion	99.68	99.2
CDY57124	Canola	mitochondrion	98.88	98.41
CDX81369	Canola	mitochondrion	98.4	97.77
AT5G66760.1	Thale cress	mitochondrion	95.03	93.53
GSMUA_Achr7P00810_001	Banana	cytosol	87.82	91.49
HORVU0Hr1G013850.1	Barley	cytosol	78.85	89.78
PGSC0003DMT400038576	Potato	mitochondrion	90.38	89.52
EER90804	Sorghum	mitochondrion	88.62	89.19
Solyc02g085350.2.1	Tomato	mitochondrion	89.9	89.19
KXG34367	Sorghum	mitochondrion	87.98	88.69
Zm00001d007966_P001	Maize	mitochondrion	87.98	88.69
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	88.14	88.57
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	87.66	88.37
TraesCS2A01G255100.1	Wheat	plastid	87.66	88.37
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	87.82	88.24
KRH69929	Soybean	mitochondrion	89.58	88.17
TraesCS5D01G420100.1	Wheat	mitochondrion	83.17	87.82
Bra024466.1-P	Field mustard	mitochondrion	88.94	87.82
KRH76805	Soybean	mitochondrion	88.62	87.78
KRH28665	Soybean	mitochondrion	88.62	87.78
TraesCS2B01G267100.1	Wheat	mitochondrion	79.81	87.22
HORVU2Hr1G061040.10	Barley	mitochondrion	73.88	87.15
Os07t0134800-01	Rice	mitochondrion	87.98	87.14
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	30.45	84.07
VIT_04s0023g01650.t01	Wine grape	mitochondrion	89.9	83.73
Zm00001d018758_P001	Maize	mitochondrion	79.33	79.45
Zm00001d029250_P001	Maize	cytosol	9.13	77.03
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.22	74.22
Zm00001d038502_P001	Maize	cytosol	17.95	51.38
Zm00001d025385_P001	Maize	cytosol	9.78	46.92
Zm00001d029316_P001	Maize	cytosol	12.34	39.9
Bra008739.1-P	Field mustard	cytosol, plastid	29.81	28.66

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EnsemblPlantsGene:Bra012100	EnsemblPlants:Bra012100.1	EnsemblPlants:Bra012100.1-P
InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005749
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0030312	GO:GO:0045273
GO:GO:0050660	GO:GO:0050897	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	UniProt:M4D6J1
PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg
TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI000254177A	SEG:seg	:	:

Description

AT5G66760 (E=0.0) SDH1-1 | SDH1-1; ATP binding / succinate dehydrogenase

Coordinates

chrA07:-:10030765..10034178

Molecular Weight (calculated)

68619.2 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.340

Length

624 amino acids

Sequence
(BLAST)

001: MWRCVSRSLR VPSSRTSLSG SRFSRFLSTG SQTGDYTIVD HTYDAVVVGA GGAGLRAAIG LSEHGFNTAC ITKLFPTRSH TVAAQGGINA ALGNMSEDDW
101: RWHMYDTVKG SDWLGDQDAI QYMCREAPKA VIELENYGLP FSRTEEGKIY QRAFGGQSLD FGKGGQAYRC ACAADRTGHA LLHTLYGQAM KHNTQFFVEY
201: FALDLLMASD GTCQGVIALN MEDGTLHRFR SAQTILATGG YGRAYFSATS AHTCTGDGNA MVARAGLPLQ DLEFVQFHPT GIYGAGCLIT EGSRGEGGIL
301: RNSEGERFME RYAPTAKDLA SRDVVSRSMT MEIREGRGVG PHKDHIYLHL NHLPPEVLKE RLPGISETAA IFAGVDVTKE PIPVLPTVHY NMGGIPTNYH
401: GEVVTIKGDD PDAVVPGLMA AGEAACASVH GANRLGANSL LDIVVFGRAC ANRVAEISKP GEKQRPLEEN AGKKTIEWLN KLRHSSGSLP TSSIRLNMQR
501: IMQNNAAVFR TQETLEEGCQ LIDKAWESFE DVQVKDRSLI WNSDLIETIE LENLLINASI TMHSAEARKE SRGAHAREDF TDGEWMKHTL GYWEDEKVRL
601: EYRPVHMDTL DDEIDTFPPK ARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.