Factsheet for Bra014079.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17016	Canola	mitochondrion	98.75	98.75
CDY17833	Canola	plastid	97.5	90.0
Bra040955.1-P	Field mustard	plastid	84.58	84.94
AT1G47420.1	Thale cress	mitochondrion	69.17	64.59
KRH05703	Soybean	mitochondrion	56.25	60.0
KRH15341	Soybean	mitochondrion	55.83	57.76
Solyc12g088900.1.1	Tomato	mitochondrion	56.25	57.69
PGSC0003DMT400039927	Potato	mitochondrion	56.25	57.69
VIT_18s0001g10780.t01	Wine grape	mitochondrion	57.08	56.61
Solyc04g079180.2.1	Tomato	plastid	56.25	56.25
PGSC0003DMT400020707	Potato	mitochondrion	55.83	55.83
Zm00001d033554_P001	Maize	mitochondrion	50.42	53.3
Os04t0418000-01	Rice	mitochondrion	50.83	52.81
EER93643	Sorghum	mitochondrion	50.0	52.63
TraesCS2D01G296500.1	Wheat	plastid	49.17	52.44
TraesCS2B01G314900.1	Wheat	mitochondrion	49.58	51.97
EES01682	Sorghum	mitochondrion	49.17	51.75
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	48.75	51.09
TraesCS4A01G418100.1	Wheat	plastid	50.42	49.59
TraesCS7D01G064400.1	Wheat	plastid	50.42	49.59
GSMUA_Achr10P...	Banana	mitochondrion	48.33	49.57
Bra030413.1-P	Field mustard	cytosol	17.92	47.25
GSMUA_Achr6P25290_001	Banana	mitochondrion	48.33	42.49
GSMUA_Achr6P25260_001	Banana	mitochondrion	46.67	41.95
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	50.83	41.22
Zm00001d013526_P002	Maize	mitochondrion	50.42	35.28

Protein Annotations

EnsemblPlants:Bra014079.1	EnsemblPlants:Bra014079.1-P	EnsemblPlantsGene:Bra014079	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
UniParc:UPI0002546AE2	UniProt:M4DC66	MapMan:2.3.6.1.5	:	:	:

Description

AT1G47420 (E=2e-085) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA08:+:3748207..3749715

Molecular Weight (calculated)

26100.3 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.191

Length

240 amino acids

Sequence
(BLAST)

001: MLLVRSLCRT AAAASVATLR SLRSAPPNQL LRNRSLLTRG FFAVSSFPSN RTPYAADCRY PRAIGIGGVR NFSEDVSHMP ELKDSDVLNA FKGLMAADWS
101: ALPSAVVNEA KKAVSKNTDD KAGQEALTNV FRAAEAVEEF GGILNSLKME IDDSIGMSGE EVKSLPEDIT KALRLAYHRY ATYLDAFGPE EVYLKKKVET
201: ELGTKMIHLK MRCSGLGSEW GKVTVLGTSG LSGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.