Factsheet for Solyc12g088900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039927	Potato	mitochondrion	97.01	97.01
Solyc04g079180.2.1	Tomato	plastid	75.21	73.33
KRH05703	Soybean	mitochondrion	57.27	59.56
CDY06735	Canola	plastid	60.26	59.0
Bra040955.1-P	Field mustard	plastid	59.83	58.58
CDY17074	Canola	mitochondrion, plastid	59.83	58.58
KRH15341	Soybean	mitochondrion	57.69	58.19
Bra014079.1-P	Field mustard	mitochondrion	57.69	56.25
CDY17016	Canola	mitochondrion	57.69	56.25
VIT_18s0001g10780.t01	Wine grape	mitochondrion	58.12	56.2
CDY17833	Canola	plastid	58.12	52.31
AT1G47420.1	Thale cress	mitochondrion	55.98	50.97
EER93643	Sorghum	mitochondrion	47.86	49.12
Zm00001d033554_P001	Maize	mitochondrion	47.44	48.9
EES01682	Sorghum	mitochondrion	47.44	48.68
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	47.01	48.03
TraesCS2B01G314900.1	Wheat	mitochondrion	47.01	48.03
TraesCS4A01G418100.1	Wheat	plastid	50.0	47.95
Os04t0418000-01	Rice	mitochondrion	47.01	47.62
TraesCS2D01G296500.1	Wheat	plastid	45.73	47.56
TraesCS7D01G064400.1	Wheat	plastid	48.72	46.72
GSMUA_Achr10P...	Banana	mitochondrion	46.58	46.58
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	50.0	39.53
GSMUA_Achr6P25260_001	Banana	mitochondrion	44.87	39.33
GSMUA_Achr6P25290_001	Banana	mitochondrion	45.73	39.19
CDX80719	Canola	mitochondrion	14.53	37.36
Bra030413.1-P	Field mustard	cytosol	13.25	34.07
Zm00001d013526_P002	Maize	mitochondrion	47.44	32.36

Protein Annotations

EnsemblPlants:Solyc12g088900.1.1	EnsemblPlantsGene:Solyc12g088900.1	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	SEG:seg
UniParc:UPI0002769469	UniProt:K4DGW1	MapMan:2.3.6.1.5	:	:	:

Description

No Description!

Coordinates

chr12:-:64093049..64096093

Molecular Weight (calculated)

26108.2 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.300

Length

234 amino acids

Sequence
(BLAST)

001: MQKLKLIRSL YRSVYRRSSA FSVSTAAAAA VNHHFHRDLH FSASPRTPFR ELRHPLTKAI GSTRSFSEDV TDMPDIEDLE IKRAFKDLMA ASWDELPNAV
101: VGDAENALTK STDDKAGQEA LINVFRAAEA VEEFTGILTS LKMEMDDAIG LSGENVKPMS KEFSEAFQTI LQRYNTYLSA FGLEEVYLKK KVEMELGTKM
201: IHLKMRCSGL DSEWGKVTVL GTSGLAGSYV EQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.