CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93643	Sorghum	mitochondrion	96.49	96.49
Os04t0418000-01	Rice	mitochondrion	78.07	77.06
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	73.68	73.36
TraesCS2B01G314900.1	Wheat	mitochondrion	73.25	72.93
TraesCS2D01G296500.1	Wheat	plastid	69.74	70.67
TraesCS7D01G064400.1	Wheat	plastid	71.49	66.8
TraesCS4A01G418100.1	Wheat	plastid	70.61	65.98
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	73.68	56.76
GSMUA_Achr10P...	Banana	mitochondrion	57.89	56.41
VIT_18s0001g10780.t01	Wine grape	mitochondrion	53.51	50.41
GSMUA_Achr6P25260_001	Banana	mitochondrion	58.77	50.19
Bra014079.1-P	Field mustard	mitochondrion	51.75	49.17
KRH15341	Soybean	mitochondrion	50.0	49.14
GSMUA_Achr6P25290_001	Banana	mitochondrion	58.77	49.08
Bra040955.1-P	Field mustard	plastid	51.32	48.95
CDY06735	Canola	plastid	51.32	48.95
KRH05703	Soybean	mitochondrion	48.25	48.89
CDY17016	Canola	mitochondrion	51.32	48.75
CDY17074	Canola	mitochondrion, plastid	50.88	48.54
PGSC0003DMT400039927	Potato	mitochondrion	49.12	47.86
Solyc12g088900.1.1	Tomato	mitochondrion	48.68	47.44
PGSC0003DMT400020707	Potato	mitochondrion	49.12	46.67
Solyc04g079180.2.1	Tomato	plastid	48.68	46.25
CDY17833	Canola	plastid	51.75	45.38
AT1G47420.1	Thale cress	mitochondrion	49.12	43.58
CDX80719	Canola	mitochondrion	11.4	28.57
Bra030413.1-P	Field mustard	cytosol	10.96	27.47

Protein Annotations

EnsemblPlants:EES01682	EnsemblPlantsGene:SORBI_3003G340700	EntrezGene:8085409	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
ProteinID:EES01682	ProteinID:EES01682.1	RefSeq:XP_002456562.1	SEG:seg	unigene:Sbi.20397	UniParc:UPI0001A846FA
UniProt:C5XNW0	MapMan:2.3.6.1.5	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66364551..66368112

Molecular Weight (calculated)

24450.2 Da

IEP (calculated)

8.037

GRAVY (calculated)

-0.200

Length

228 amino acids

Sequence
(BLAST)

001: MAAAALRSSA ARRLLRLAPA ASSALSAASR PTAGVAPLTR PIAALSGGNN PISWKPRRFF SSNEKHLPAI SDPEIEAAFK DLLAASWNEL PDSLIEEAKK
101: AESKATNDKA GQEALKNVFR AAEACEEFSG TLVTLRMALD DLCGLTGENV GPLPGYIEDA VKAAYNRYMT YLESFGPEEN YLRKKVETEL GTKMIHLKMR
201: CSGIGSEWGK ISLIGTSGIS GSYVELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.