Factsheet for Bra040955.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06735	Canola	plastid	99.58	99.58
Bra014079.1-P	Field mustard	mitochondrion	84.94	84.58
AT1G47420.1	Thale cress	mitochondrion	69.04	64.2
Solyc12g088900.1.1	Tomato	mitochondrion	58.58	59.83
PGSC0003DMT400039927	Potato	mitochondrion	58.58	59.83
KRH05703	Soybean	mitochondrion	56.07	59.56
Solyc04g079180.2.1	Tomato	plastid	59.0	58.75
PGSC0003DMT400020707	Potato	mitochondrion	58.58	58.33
KRH15341	Soybean	mitochondrion	55.23	56.9
VIT_18s0001g10780.t01	Wine grape	mitochondrion	57.32	56.61
Zm00001d033554_P001	Maize	mitochondrion	49.79	52.42
EER93643	Sorghum	mitochondrion	49.79	52.19
Os04t0418000-01	Rice	mitochondrion	50.21	51.95
EES01682	Sorghum	mitochondrion	48.95	51.32
TraesCS2D01G296500.1	Wheat	plastid	48.12	51.11
TraesCS7D01G064400.1	Wheat	plastid	51.46	50.41
TraesCS2B01G314900.1	Wheat	mitochondrion	48.12	50.22
TraesCS4A01G418100.1	Wheat	plastid	51.05	50.0
GSMUA_Achr10P...	Banana	mitochondrion	48.54	49.57
Bra030413.1-P	Field mustard	cytosol	18.83	49.45
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	47.28	49.34
GSMUA_Achr6P25290_001	Banana	mitochondrion	47.7	41.76
GSMUA_Achr6P25260_001	Banana	mitochondrion	46.03	41.2
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	49.37	39.86
Zm00001d013526_P002	Maize	mitochondrion	49.79	34.69

Protein Annotations

EnsemblPlants:Bra040955.1	EnsemblPlants:Bra040955.1-P	EnsemblPlantsGene:Bra040955	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
SEG:seg	UniParc:UPI000253EADC	UniProt:M4FIM6	MapMan:2.3.6.1.5	:	:

Description

AT1G47420 (E=2e-085) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrScaffold000337:+:5717..6944

Molecular Weight (calculated)

26303.4 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.242

Length

239 amino acids

Sequence
(BLAST)

001: MAFLRSLCRT AAAASSVATL RSSRSAARSQ LLRHRFLSTR GFFAVSSCPS NRTPYDFRYP RAMDIGQVRS FSEDVSHMPE IKDGDVLKAF KELMAADWAA
101: LPSAVVNDAK NAVSKNTDDK EGQEALLNVF RAAEAVEEFG GILTSLKMEI DDSIGMSGEN VKSLPEDITK ALHLAYHRYT TYLDAFGPEE VYLKKKVEME
201: LGTKMIHLKM RCSGLGSEWG KVTVLGTSGL SGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.