CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01682	Sorghum	mitochondrion	96.49	96.49
Zm00001d033554_P001	Maize	mitochondrion	95.61	96.04
Os04t0418000-01	Rice	mitochondrion	79.39	78.36
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	75.44	75.11
TraesCS2B01G314900.1	Wheat	mitochondrion	74.56	74.24
TraesCS2D01G296500.1	Wheat	plastid	71.05	72.0
TraesCS7D01G064400.1	Wheat	plastid	72.37	67.62
TraesCS4A01G418100.1	Wheat	plastid	71.49	66.8
Zm00001d013526_P002	Maize	mitochondrion	91.23	60.64
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	74.56	57.43
GSMUA_Achr10P...	Banana	mitochondrion	57.89	56.41
VIT_18s0001g10780.t01	Wine grape	mitochondrion	53.51	50.41
Bra014079.1-P	Field mustard	mitochondrion	52.63	50.0
KRH15341	Soybean	mitochondrion	50.88	50.0
CDY06735	Canola	plastid	52.19	49.79
Bra040955.1-P	Field mustard	plastid	52.19	49.79
CDY17016	Canola	mitochondrion	52.19	49.58
GSMUA_Achr6P25260_001	Banana	mitochondrion	57.89	49.44
CDY17074	Canola	mitochondrion, plastid	51.75	49.37
GSMUA_Achr6P25290_001	Banana	mitochondrion	58.33	48.72
KRH05703	Soybean	mitochondrion	47.81	48.44
PGSC0003DMT400039927	Potato	mitochondrion	49.56	48.29
Solyc12g088900.1.1	Tomato	mitochondrion	49.12	47.86
PGSC0003DMT400020707	Potato	mitochondrion	50.0	47.5
Solyc04g079180.2.1	Tomato	plastid	49.56	47.08
CDY17833	Canola	plastid	52.63	46.15
AT1G47420.1	Thale cress	mitochondrion	49.56	43.97
CDX80719	Canola	mitochondrion	11.4	28.57
Bra030413.1-P	Field mustard	cytosol	10.53	26.37

Protein Annotations

EnsemblPlants:EER93643	EnsemblPlantsGene:SORBI_3001G132100	EntrezGene:8062972	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
ProteinID:EER93643	ProteinID:EER93643.1	RefSeq:XP_002466645.1	SEG:seg	unigene:Sbi.5813	UniParc:UPI0001A82994
UniProt:C5WPI6	MapMan:2.3.6.1.5	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:10382043..10386411

Molecular Weight (calculated)

24445.1 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.162

Length

228 amino acids

Sequence
(BLAST)

001: MAAAALRSSA ARRLLRLAPA ASSALSAASR PTAGVAPLSR PFAALSGGNN PISWKLRRFF SSNEKHLPAI SDPEIESAFK DLLAASWNEL PDSLVEEAKK
101: AVSKATDDNA GQEALKNVFR AAEACEEFSG TLVTLRMALD DLCGLTGENV GPLPGYIEDA VKAAYNRYMT YLESFGPEEN YLRKKVETEL GTKMIHLKMR
201: CSGIGSEWGK ISLIGTSGIS GSYVELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.