CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030413.1-P	Field mustard	cytosol	56.04	56.04
CDY06735	Canola	plastid	48.35	18.41
CDY17074	Canola	mitochondrion, plastid	48.35	18.41
CDY17016	Canola	mitochondrion	45.05	17.08
CDY17833	Canola	plastid	46.15	16.15
KRH05703	Soybean	mitochondrion	38.46	15.56
AT1G47420.1	Thale cress	mitochondrion	42.86	15.18
PGSC0003DMT400039927	Potato	mitochondrion	38.46	14.96
KRH15341	Soybean	mitochondrion	37.36	14.66
Solyc12g088900.1.1	Tomato	mitochondrion	37.36	14.53
Solyc04g079180.2.1	Tomato	plastid	36.26	13.75
PGSC0003DMT400020707	Potato	mitochondrion	36.26	13.75
VIT_18s0001g10780.t01	Wine grape	mitochondrion	35.16	13.22
Os04t0418000-01	Rice	mitochondrion	30.77	12.12
TraesCS2B01G314900.1	Wheat	mitochondrion	29.67	11.79
Zm00001d033554_P001	Maize	mitochondrion	28.57	11.45
EER93643	Sorghum	mitochondrion	28.57	11.4
EES01682	Sorghum	mitochondrion	28.57	11.4
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	27.47	10.92
TraesCS2D01G296500.1	Wheat	plastid	26.37	10.67
TraesCS7D01G064400.1	Wheat	plastid	26.37	9.84
TraesCS4A01G418100.1	Wheat	plastid	25.27	9.43
GSMUA_Achr10P...	Banana	mitochondrion	24.18	9.4
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	27.47	8.45
GSMUA_Achr6P25260_001	Banana	mitochondrion	24.18	8.24
GSMUA_Achr6P25290_001	Banana	mitochondrion	24.18	8.06
Zm00001d013526_P002	Maize	mitochondrion	26.37	7.0

Protein Annotations

EnsemblPlants:CDX80719	EnsemblPlantsGene:GSBRNA2T00133999001	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	ProteinID:CDX80719
ProteinID:CDX80719.1	UniParc:UPI0004EADB89	UniPathway:UPA00223	MapMan:35.1	:	:

Description

BnaC08g05530D

Coordinates

chrLK031822:-:1101293..1101711

Molecular Weight (calculated)

10287.3 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.288

Length

91 amino acids

Sequence
(BLAST)

1: MLTRYSSLRG SRLLVCWNPR TVDISHIVQV HNSTEDVSHM PEIKDRNVLN ANKPLMAADW EALPYAVVHD AENTISKNTE DKAGYQLALI L

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.