Factsheet for TraesCS2A01G298400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G314900.1	Wheat	mitochondrion	96.51	96.51
TraesCS2D01G296500.1	Wheat	plastid	84.72	86.22
Os04t0418000-01	Rice	mitochondrion	80.79	80.09
EER93643	Sorghum	mitochondrion	75.11	75.44
Zm00001d033554_P001	Maize	mitochondrion	73.8	74.45
EES01682	Sorghum	mitochondrion	73.36	73.68
TraesCS4A01G418100.1	Wheat	plastid	69.43	65.16
GSMUA_Achr10P...	Banana	mitochondrion	54.59	53.42
VIT_18s0001g10780.t01	Wine grape	mitochondrion	53.28	50.41
KRH15341	Soybean	mitochondrion	49.78	49.14
KRH05703	Soybean	mitochondrion	48.03	48.89
Bra014079.1-P	Field mustard	mitochondrion	51.09	48.75
GSMUA_Achr6P25260_001	Banana	mitochondrion	56.77	48.69
CDY17016	Canola	mitochondrion	50.66	48.33
GSMUA_Achr6P25290_001	Banana	mitochondrion	57.21	47.99
PGSC0003DMT400039927	Potato	mitochondrion	48.91	47.86
Zm00001d013526_P002	Maize	mitochondrion	71.18	47.52
CDY06735	Canola	plastid	49.34	47.28
Bra040955.1-P	Field mustard	plastid	49.34	47.28
Solyc12g088900.1.1	Tomato	mitochondrion	48.03	47.01
CDY17074	Canola	mitochondrion, plastid	48.91	46.86
Solyc04g079180.2.1	Tomato	plastid	47.6	45.42
CDY17833	Canola	plastid	51.09	45.0
PGSC0003DMT400020707	Potato	mitochondrion	46.72	44.58
AT1G47420.1	Thale cress	mitochondrion	49.34	43.97
CDX80719	Canola	mitochondrion	10.92	27.47
Bra030413.1-P	Field mustard	cytosol	10.48	26.37

Protein Annotations

EnsemblPlants:TraesCS2A01G298400.1	EnsemblPlantsGene:TraesCS2A01G298400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0016020
GO:GO:0045273	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	SEG:seg	MapMan:2.3.6.1.5

Description

No Description!

Coordinates

chr2A:+:513841262..513844936

Molecular Weight (calculated)

24663.4 Da

IEP (calculated)

7.045

GRAVY (calculated)

-0.118

Length

229 amino acids

Sequence
(BLAST)

001: MAAALRSSSA AAVHRFLRIS PSTLSTLPYA SRPAAVPPFS PSIAAISGGN NAFSWNFRRL LSSNEKHMSA MSDPQIESAV KDLMAASWSE LPHSLVEEAK
101: KAVSKSTDDA AGQEALKNVF RAAEACEEFG GVLVTLRMAL DDLCGLTGEN VGPLPGYVED AVKSTFNRYM TYLESFGPDE HFLRKKVENE LGTKMIHLKM
201: RCSGIGSEWG KITLIGTSGI SGSYVELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.