Factsheet for GSMUA_Achr6P25260_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25290_001	Banana	mitochondrion	94.01	91.94
GSMUA_Achr10P...	Banana	mitochondrion	57.3	65.38
EES01682	Sorghum	mitochondrion	50.19	58.77
Zm00001d033554_P001	Maize	mitochondrion	49.81	58.59
EER93643	Sorghum	mitochondrion	49.44	57.89
TraesCS2D01G296500.1	Wheat	plastid	48.31	57.33
Os04t0418000-01	Rice	mitochondrion	49.44	57.14
TraesCS2B01G314900.1	Wheat	mitochondrion	48.69	56.77
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	48.69	56.77
TraesCS4A01G418100.1	Wheat	plastid	49.06	53.69
TraesCS7D01G064400.1	Wheat	plastid	48.69	53.28
VIT_18s0001g10780.t01	Wine grape	mitochondrion	46.44	51.24
KRH05703	Soybean	mitochondrion	41.57	49.33
KRH15341	Soybean	mitochondrion	42.32	48.71
CDY17016	Canola	mitochondrion	41.95	46.67
Bra014079.1-P	Field mustard	mitochondrion	41.95	46.67
CDY06735	Canola	plastid	41.2	46.03
Bra040955.1-P	Field mustard	plastid	41.2	46.03
CDY17074	Canola	mitochondrion, plastid	40.82	45.61
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	50.19	45.27
PGSC0003DMT400039927	Potato	mitochondrion	39.33	44.87
Solyc12g088900.1.1	Tomato	mitochondrion	39.33	44.87
Solyc04g079180.2.1	Tomato	plastid	40.07	44.58
CDY17833	Canola	plastid	42.32	43.46
PGSC0003DMT400020707	Potato	mitochondrion	38.95	43.33
AT1G47420.1	Thale cress	mitochondrion	39.7	41.25
Zm00001d013526_P002	Maize	mitochondrion	49.06	38.19
Bra030413.1-P	Field mustard	cytosol	9.36	27.47
CDX80719	Canola	mitochondrion	8.24	24.18

Protein Annotations

EnsemblPlants:GSMUA_Achr6P25260_001	EnsemblPlants:GSMUA_Achr6T25260_001	EnsemblPlantsGene:GSMUA_Achr6G25260_001	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
SEG:seg	UniParc:UPI000296DACA	UniProt:M0TA22	MapMan:2.3.6.1.5	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G25260_001]

Coordinates

chr6:+:26347575..26352462

Molecular Weight (calculated)

29160.9 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.088

Length

267 amino acids

Sequence
(BLAST)

001: MATSSIAFVR RLRTIRPPSS TTSSAAFVRH CSFIGSDLHE LGPVATRTIA TQAVRSWMKG VNNIHEITAS NLQASQIRFG TCGISGHKYS YTLNLRHAFS
101: SNISQLPVIA DPDIEAAMKD LLAINWDEIP DSVINETKKA LSKTTEDKAG QEALANVFHA AEASVEFSGV LVSLRMALDD LCGLSGENVG HLPEHLEDAI
201: RAAYKRYITY LDSFGPDETF LRKKVELELG TKMIHLKMRC SGIGSEWGKV MLLGTSGLSG SYVELRS

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.