Factsheet for Zm00001d033554_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93643	Sorghum	mitochondrion	96.04	95.61
Os04t0418000-01	Rice	mitochondrion	78.41	77.06
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	74.45	73.8
TraesCS2B01G314900.1	Wheat	mitochondrion	73.57	72.93
TraesCS2D01G296500.1	Wheat	plastid	70.04	70.67
TraesCS7D01G064400.1	Wheat	plastid	70.93	65.98
TraesCS4A01G418100.1	Wheat	plastid	70.04	65.16
Zm00001d013526_P002	Maize	mitochondrion	89.87	59.48
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	73.13	56.08
GSMUA_Achr10P...	Banana	mitochondrion	57.27	55.56
Bra014079.1-P	Field mustard	mitochondrion	53.3	50.42
CDY17016	Canola	mitochondrion	52.86	50.0
VIT_18s0001g10780.t01	Wine grape	mitochondrion	53.3	50.0
GSMUA_Achr6P25260_001	Banana	mitochondrion	58.59	49.81
CDY06735	Canola	plastid	52.42	49.79
Bra040955.1-P	Field mustard	plastid	52.42	49.79
CDY17074	Canola	mitochondrion, plastid	51.98	49.37
KRH15341	Soybean	mitochondrion	50.22	49.14
GSMUA_Achr6P25290_001	Banana	mitochondrion	58.59	48.72
KRH05703	Soybean	mitochondrion	48.02	48.44
PGSC0003DMT400039927	Potato	mitochondrion	49.34	47.86
Solyc12g088900.1.1	Tomato	mitochondrion	48.9	47.44
CDY17833	Canola	plastid	53.3	46.54
PGSC0003DMT400020707	Potato	mitochondrion	48.9	46.25
Solyc04g079180.2.1	Tomato	plastid	48.46	45.83
AT1G47420.1	Thale cress	mitochondrion	49.34	43.58
CDX80719	Canola	mitochondrion	11.45	28.57
Bra030413.1-P	Field mustard	cytosol	10.13	25.27

Protein Annotations

EMBL:EU976785	EnsemblPlants:Zm00001d033554_P001	EnsemblPlants:Zm00001d033554_T001	EnsemblPlantsGene:Zm00001d033554	InterPro:DUF4370	PANTHER:PTHR36139
PFAM:PF14290	ProteinID:ONM07914.1	ProteinID:ONM07915.1	SEG:seg	UniParc:UPI000182FE55	UniProt:B6UHS0
MapMan:2.3.6.1.5	:	:	:	:	:

Description

succinate dehydrogenase12 succinate dehydrogenase12

Coordinates

chr1:+:267003826..267007846

Molecular Weight (calculated)

24382.2 Da

IEP (calculated)

8.038

GRAVY (calculated)

-0.138

Length

227 amino acids

Sequence
(BLAST)

001: MAAAALRSSA RRLLRLTPAP SSALFAASRP TARVAPLSRP IAALSGGNNP ISWKLRRFFS SNEKHLPAIS DPEIEAAFKD LLAASWNELP DSLVAEAKKA
101: VSKATDDNAG QEALKNVFGA AEACEEFSGT LVTLRMALDD LCGLTGENVG PLPGYIEDAV KAAYNRYMTY LESFGPEENY LRKKVETELG TKMIHLKMRC
201: SGIGSEWGKI SLIGTSGISG SYVELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.