Factsheet for TraesCS2B01G314900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	96.51	96.51
TraesCS2D01G296500.1	Wheat	plastid	86.03	87.56
Os04t0418000-01	Rice	mitochondrion	79.48	78.79
EER93643	Sorghum	mitochondrion	74.24	74.56
Zm00001d033554_P001	Maize	mitochondrion	72.93	73.57
EES01682	Sorghum	mitochondrion	72.93	73.25
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	70.31	54.39
GSMUA_Achr10P...	Banana	mitochondrion	55.46	54.27
VIT_18s0001g10780.t01	Wine grape	mitochondrion	53.71	50.83
Bra014079.1-P	Field mustard	mitochondrion	51.97	49.58
CDY17016	Canola	mitochondrion	51.53	49.17
GSMUA_Achr6P25290_001	Banana	mitochondrion	58.08	48.72
KRH15341	Soybean	mitochondrion	49.34	48.71
GSMUA_Achr6P25260_001	Banana	mitochondrion	56.77	48.69
CDY06735	Canola	plastid	50.22	48.12
Bra040955.1-P	Field mustard	plastid	50.22	48.12
KRH05703	Soybean	mitochondrion	47.16	48.0
PGSC0003DMT400039927	Potato	mitochondrion	48.91	47.86
CDY17074	Canola	mitochondrion, plastid	49.78	47.7
Zm00001d013526_P002	Maize	mitochondrion	70.74	47.23
Solyc12g088900.1.1	Tomato	mitochondrion	48.03	47.01
CDY17833	Canola	plastid	51.97	45.77
Solyc04g079180.2.1	Tomato	plastid	47.16	45.0
AT1G47420.1	Thale cress	mitochondrion	50.22	44.75
PGSC0003DMT400020707	Potato	mitochondrion	46.29	44.17
CDX80719	Canola	mitochondrion	11.79	29.67
Bra030413.1-P	Field mustard	cytosol	10.92	27.47

Protein Annotations

EnsemblPlants:TraesCS2B01G314900.1	EnsemblPlantsGene:TraesCS2B01G314900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0005749	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735
GO:GO:0016020	GO:GO:0045273	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	SEG:seg
MapMan:2.3.6.1.5	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:450181329..450184130

Molecular Weight (calculated)

24901.7 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.177

Length

229 amino acids

Sequence
(BLAST)

001: MAAALRSSSA AAVHRFLRIS RSTLSTLPYA SRPATVPPFS PSITAISGGY NAFSWNFRRL LSSNEKHMPA MSDPQIESAL KDLMAASWSE LPHSLVEEAK
101: KTVSKSTDDA AGQEALKNVF RAAEACEEFG GVLVTLRMAL DDLCGLTGEN VGPLPGYVED AVKSTYNRYM TYLESFGPDE HFLRKKVENE LGTKMIHLKM
201: RCSGIGSEWG KITLIGTSGI SGSYVELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.