CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15341	Soybean	mitochondrion	91.56	88.79
Solyc04g079180.2.1	Tomato	plastid	65.78	61.67
PGSC0003DMT400020707	Potato	mitochondrion	64.0	60.0
VIT_18s0001g10780.t01	Wine grape	mitochondrion	61.78	57.44
Solyc12g088900.1.1	Tomato	mitochondrion	59.56	57.27
CDY17016	Canola	mitochondrion	60.89	57.08
PGSC0003DMT400039927	Potato	mitochondrion	59.11	56.84
Bra014079.1-P	Field mustard	mitochondrion	60.0	56.25
Bra040955.1-P	Field mustard	plastid	59.56	56.07
CDY06735	Canola	plastid	59.56	56.07
CDY17074	Canola	mitochondrion, plastid	59.11	55.65
CDY17833	Canola	plastid	60.44	52.31
AT1G47420.1	Thale cress	mitochondrion	57.78	50.58
EES01682	Sorghum	mitochondrion	48.89	48.25
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	48.89	48.03
Zm00001d033554_P001	Maize	mitochondrion	48.44	48.02
EER93643	Sorghum	mitochondrion	48.44	47.81
Os04t0418000-01	Rice	mitochondrion	48.44	47.19
TraesCS2B01G314900.1	Wheat	mitochondrion	48.0	47.16
TraesCS2D01G296500.1	Wheat	plastid	47.11	47.11
GSMUA_Achr10P...	Banana	mitochondrion	48.89	47.01
TraesCS4A01G418100.1	Wheat	plastid	48.89	45.08
TraesCS7D01G064400.1	Wheat	plastid	48.0	44.26
GSMUA_Achr6P25260_001	Banana	mitochondrion	49.33	41.57
GSMUA_Achr6P25290_001	Banana	mitochondrion	50.22	41.39
CDX80719	Canola	mitochondrion	15.56	38.46
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	49.78	37.84
Bra030413.1-P	Field mustard	cytosol	14.22	35.16
Zm00001d013526_P002	Maize	mitochondrion	48.89	32.07

Protein Annotations

EMBL:ACUP02010773	EnsemblPlants:KRH05703	EnsemblPlantsGene:GLYMA_17G243600	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
ProteinID:KRH05703	ProteinID:KRH05703.1	SEG:seg	UniParc:UPI00023DA95D	UniProt:A0A0R0FHZ8	MapMan:2.3.6.1.5

Description

hypothetical protein

Coordinates

chr17:-:39931255..39933835

Molecular Weight (calculated)

25030.2 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.256

Length

225 amino acids

Sequence
(BLAST)

001: MEKMMRLRPL FRSLSCRSYH FVLRPSLLSR SPNPLPSPSP SECRSPLSMG LGSMRFYSED VTHMPNIKDP VLYNAFKDLM AVSWSELPDS VISDVKNALS
101: KNTDDKAGKE VVENVFCAAK AIEEFGGILI SLKLEFDDSI GMSGEDVKPL PDHIKNALHT IFDRYSTYLN SFGPDESYLR KKVETELGAK MIHLKMRCSG
201: LGAEWGKVTV LGTSGLAGSY VEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.