Factsheet for Zm00001d013526_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93643	Sorghum	mitochondrion	60.64	91.23
Zm00001d033554_P001	Maize	mitochondrion	59.48	89.87
Os04t0418000-01	Rice	mitochondrion	51.02	75.76
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	47.52	71.18
TraesCS2B01G314900.1	Wheat	mitochondrion	47.23	70.74
TraesCS2D01G296500.1	Wheat	plastid	45.48	69.33
TraesCS7D01G064400.1	Wheat	plastid	48.4	68.03
TraesCS4A01G418100.1	Wheat	plastid	46.94	65.98
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	51.02	59.12
GSMUA_Achr10P...	Banana	mitochondrion	38.19	55.98
Bra014079.1-P	Field mustard	mitochondrion	35.28	50.42
KRH15341	Soybean	mitochondrion	33.82	50.0
CDY17016	Canola	mitochondrion	34.99	50.0
Bra040955.1-P	Field mustard	plastid	34.69	49.79
CDY06735	Canola	plastid	34.69	49.79
VIT_18s0001g10780.t01	Wine grape	mitochondrion	34.99	49.59
CDY17074	Canola	mitochondrion, plastid	34.4	49.37
GSMUA_Achr6P25260_001	Banana	mitochondrion	38.19	49.06
KRH05703	Soybean	mitochondrion	32.07	48.89
GSMUA_Achr6P25290_001	Banana	mitochondrion	38.48	48.35
Solyc04g079180.2.1	Tomato	plastid	33.82	48.33
PGSC0003DMT400020707	Potato	mitochondrion	33.82	48.33
PGSC0003DMT400039927	Potato	mitochondrion	32.94	48.29
Solyc12g088900.1.1	Tomato	mitochondrion	32.36	47.44
CDY17833	Canola	plastid	35.28	46.54
AT1G47420.1	Thale cress	mitochondrion	33.82	45.14
CDX80719	Canola	mitochondrion	7.0	26.37
Bra030413.1-P	Field mustard	cytosol	6.41	24.18

Protein Annotations

EnsemblPlants:Zm00001d013526_P002	EnsemblPlants:Zm00001d013526_T002	EnsemblPlantsGene:Zm00001d013526	EntrezGene:100276029	InterPro:DUF4370	PANTHER:PTHR36139
PFAM:PF14290	ProteinID:AQK63771.1	SEG:seg	UniParc:UPI000845717D	UniProt:A0A1D6GK99	MapMan:2.3.6.1.5

Description

succinate dehydrogenase10 succinate dehydrogenase10

Coordinates

chr5:-:13610216..13614675

Molecular Weight (calculated)

36671.5 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.330

Length

343 amino acids

Sequence
(BLAST)

001: MRAPSSEQCQ IWSGTPRRAV SNPRTRHGSA CRLPRAPEVR FGSAVPLPFF SYAIDCELRP SPSPPTRPVP RRRTTETAPP PRPLALTTAM AAAALRSSAR
101: RLLRLAPAAS SALSAGSRPT AGAAPLTRPI AALSEPQTEG GWTGGSDIGA ATEPVSVEGE LGGNNPISWK LRRFYSSNEK HLPAISDPEI ESAFKDLLAA
201: SWNELPDSLV AEAKKAASKA TDDSAGQEAL KNVFRAAEAC EEFSGTLVTL RMALDDLCGL TGENVGPLPG YIEDAVKAAY NRYMTYLESF GPEENYLRKK
301: VETELGTKMI HLKMRCSGIG SEWGKISLIG TSGISGSYVE LRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.