Factsheet for Bra030413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80719	Canola	mitochondrion	56.04	56.04
Bra040955.1-P	Field mustard	plastid	49.45	18.83
Bra014079.1-P	Field mustard	mitochondrion	47.25	17.92
AT1G47420.1	Thale cress	mitochondrion	47.25	16.73
KRH05703	Soybean	mitochondrion	35.16	14.22
Solyc04g079180.2.1	Tomato	plastid	36.26	13.75
PGSC0003DMT400020707	Potato	mitochondrion	36.26	13.75
PGSC0003DMT400039927	Potato	mitochondrion	35.16	13.68
KRH15341	Soybean	mitochondrion	34.07	13.36
Solyc12g088900.1.1	Tomato	mitochondrion	34.07	13.25
VIT_18s0001g10780.t01	Wine grape	mitochondrion	35.16	13.22
TraesCS4A01G418100.1	Wheat	plastid	29.67	11.07
EES01682	Sorghum	mitochondrion	27.47	10.96
TraesCS2B01G314900.1	Wheat	mitochondrion	27.47	10.92
GSMUA_Achr10P...	Banana	mitochondrion	27.47	10.68
EER93643	Sorghum	mitochondrion	26.37	10.53
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	26.37	10.48
Os04t0418000-01	Rice	mitochondrion	26.37	10.39
TraesCS2D01G296500.1	Wheat	plastid	25.27	10.22
Zm00001d033554_P001	Maize	mitochondrion	25.27	10.13
TraesCS7D01G064400.1	Wheat	plastid	26.37	9.84
GSMUA_Achr6P25260_001	Banana	mitochondrion	27.47	9.36
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	26.37	8.11
GSMUA_Achr6P25290_001	Banana	mitochondrion	24.18	8.06
Zm00001d013526_P002	Maize	mitochondrion	24.18	6.41

Protein Annotations

EnsemblPlants:Bra030413.1	EnsemblPlants:Bra030413.1-P	EnsemblPlantsGene:Bra030413	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
UniParc:UPI000254790D	UniProt:M4ENP3	MapMan:35.1	:	:	:

Description

AT1G47420 (E=5e-016) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA05:+:11021061..11022043

Molecular Weight (calculated)

10036.0 Da

IEP (calculated)

5.010

GRAVY (calculated)

-0.053

Length

91 amino acids

Sequence
(BLAST)

1: MILMSSFHTC AGTLEQLIYS HIVVQVRNFS EDVSHMQEIK DSDVLNGCKA LMPADLEALP YAVGHDAKNT ISRNTEDKAG QEAGYRLALI L

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.