Factsheet for GSMUA_Achr10P15850_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93643	Sorghum	mitochondrion	56.41	57.89
EES01682	Sorghum	mitochondrion	56.41	57.89
GSMUA_Achr6P25260_001	Banana	mitochondrion	65.38	57.3
Zm00001d033554_P001	Maize	mitochondrion	55.56	57.27
Os04t0418000-01	Rice	mitochondrion	56.41	57.14
GSMUA_Achr6P25290_001	Banana	mitochondrion	65.81	56.41
TraesCS2B01G314900.1	Wheat	mitochondrion	54.27	55.46
TraesCS2D01G296500.1	Wheat	plastid	52.56	54.67
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	53.42	54.59
TraesCS7D01G064400.1	Wheat	plastid	55.56	53.28
TraesCS4A01G418100.1	Wheat	plastid	55.56	53.28
VIT_18s0001g10780.t01	Wine grape	mitochondrion	52.56	50.83
KRH05703	Soybean	mitochondrion	47.01	48.89
KRH15341	Soybean	mitochondrion	48.29	48.71
CDY06735	Canola	plastid	49.57	48.54
Bra040955.1-P	Field mustard	plastid	49.57	48.54
CDY17016	Canola	mitochondrion	49.57	48.33
Bra014079.1-P	Field mustard	mitochondrion	49.57	48.33
CDY17074	Canola	mitochondrion, plastid	48.72	47.7
Solyc04g079180.2.1	Tomato	plastid	48.29	47.08
PGSC0003DMT400039927	Potato	mitochondrion	47.01	47.01
Solyc12g088900.1.1	Tomato	mitochondrion	46.58	46.58
PGSC0003DMT400020707	Potato	mitochondrion	47.01	45.83
CDY17833	Canola	plastid	50.0	45.0
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	56.84	44.93
AT1G47420.1	Thale cress	mitochondrion	48.29	43.97
Zm00001d013526_P002	Maize	mitochondrion	55.98	38.19
Bra030413.1-P	Field mustard	cytosol	10.68	27.47
CDX80719	Canola	mitochondrion	9.4	24.18

Protein Annotations

EnsemblPlants:GSMUA_Achr10P15850_001	EnsemblPlants:GSMUA_Achr10T15850_001	EnsemblPlantsGene:GSMUA_Achr10G15850_001	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
SEG:seg	UniParc:UPI000294BBF1	UniProt:M0RIL0	MapMan:2.3.6.1.5	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G15850_001]

Coordinates

chr10:+:23634025..23636512

Molecular Weight (calculated)

25738.7 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.278

Length

234 amino acids

Sequence
(BLAST)

001: MATMLRSLAA RRHLWSSSGL VRSYSSHQPT ALVSKSFTRS LPRRIHPISD VPDCSSPFVN RLRRAFSCNV NQLPGIADPD IEAAFKDLMA MNWDEIPDSV
101: THNTKKTLSK ATGDETGQEA LANAFRAAEA SVEFSGILVS LRMALDDLGG ISGENVGQLP EYLEDGIKTA YKRYITYLDS FSPDETYLRK KVETELGTKM
201: IHLKMRCSGI GSEWGKVTLL GTSGLSGSYV ELRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.