CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06735	Canola	plastid	95.82	95.82
CDY17016	Canola	mitochondrion	83.68	83.33
CDY17833	Canola	plastid	84.1	77.31
AT1G47420.1	Thale cress	mitochondrion	68.62	63.81
Solyc12g088900.1.1	Tomato	mitochondrion	58.58	59.83
PGSC0003DMT400039927	Potato	mitochondrion	58.58	59.83
KRH05703	Soybean	mitochondrion	55.65	59.11
Solyc04g079180.2.1	Tomato	plastid	59.0	58.75
PGSC0003DMT400020707	Potato	mitochondrion	58.58	58.33
KRH15341	Soybean	mitochondrion	54.81	56.47
VIT_18s0001g10780.t01	Wine grape	mitochondrion	56.9	56.2
Zm00001d033554_P001	Maize	mitochondrion	49.37	51.98
EER93643	Sorghum	mitochondrion	49.37	51.75
TraesCS2D01G296500.1	Wheat	plastid	48.12	51.11
Os04t0418000-01	Rice	mitochondrion	49.37	51.08
EES01682	Sorghum	mitochondrion	48.54	50.88
TraesCS7D01G064400.1	Wheat	plastid	51.88	50.82
TraesCS4A01G418100.1	Wheat	plastid	51.46	50.41
TraesCS2B01G314900.1	Wheat	mitochondrion	47.7	49.78
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	46.86	48.91
GSMUA_Achr10P...	Banana	mitochondrion	47.7	48.72
CDX80719	Canola	mitochondrion	18.41	48.35
GSMUA_Achr6P25290_001	Banana	mitochondrion	47.28	41.39
GSMUA_Achr6P25260_001	Banana	mitochondrion	45.61	40.82
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	49.79	40.2
Zm00001d013526_P002	Maize	mitochondrion	49.37	34.4

Protein Annotations

EnsemblPlants:CDY17074	EnsemblPlantsGene:GSBRNA2T00095075001	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	ProteinID:CDY17074
ProteinID:CDY17074.1	UniParc:UPI0004EEC47D	UniPathway:UPA00223	UniProt:A0A078FVH9	MapMan:2.3.6.1.5	:

Description

BnaC06g00070DBnaC06g00070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVH9]

Coordinates

chrLK032070:+:174658..177745

Molecular Weight (calculated)

26006.2 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.203

Length

239 amino acids

Sequence
(BLAST)

001: MAFLRSLCRT AAAGASVATL RSSRSAAPSQ LLRHRLLSTR GFVAVSSCPS NRTPYDCRYP RAMDIGQVRS FSEDVSHMPE IKDSGVLKAF KELMAADWAA
101: LPSAVVNDAK NAVSKNTDDK GGQEALMNVF RAAEAVEEFG GILTSLKMEI DDSIGMSGEN VKSLPEDITK ALHLAYHRYT TYLDAFGPEE VYLKKKVEME
201: LGTKMIHLKM RCSGLGSEWG KVTVLGTSGL SGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.