Factsheet for PGSC0003DMT400020707

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079180.2.1	Tomato	plastid	96.67	96.67
PGSC0003DMT400039927	Potato	mitochondrion	73.33	75.21
KRH05703	Soybean	mitochondrion	60.0	64.0
KRH15341	Soybean	mitochondrion	60.83	62.93
Bra040955.1-P	Field mustard	plastid	58.33	58.58
CDY06735	Canola	plastid	58.33	58.58
CDY17074	Canola	mitochondrion, plastid	58.33	58.58
VIT_18s0001g10780.t01	Wine grape	mitochondrion	58.75	58.26
CDY17016	Canola	mitochondrion	56.25	56.25
Bra014079.1-P	Field mustard	mitochondrion	55.83	55.83
AT1G47420.1	Thale cress	mitochondrion	57.08	53.31
CDY17833	Canola	plastid	56.67	52.31
EER93643	Sorghum	mitochondrion	47.5	50.0
EES01682	Sorghum	mitochondrion	46.67	49.12
Zm00001d033554_P001	Maize	mitochondrion	46.25	48.9
Os04t0418000-01	Rice	mitochondrion	46.25	48.05
TraesCS7D01G064400.1	Wheat	plastid	47.92	47.13
GSMUA_Achr10P...	Banana	mitochondrion	45.83	47.01
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	44.58	46.72
TraesCS4A01G418100.1	Wheat	plastid	47.08	46.31
TraesCS2B01G314900.1	Wheat	mitochondrion	44.17	46.29
TraesCS2D01G296500.1	Wheat	plastid	42.08	44.89
GSMUA_Achr6P25290_001	Banana	mitochondrion	44.58	39.19
GSMUA_Achr6P25260_001	Banana	mitochondrion	43.33	38.95
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	47.08	38.18
CDX80719	Canola	mitochondrion	13.75	36.26
Bra030413.1-P	Field mustard	cytosol	13.75	36.26
Zm00001d013526_P002	Maize	mitochondrion	48.33	33.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400020707	EnsemblPlantsGene:PGSC0003DMG400008025	EntrezGene:102604541	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290
PGSC:PGSC0003DMG400008025	RefSeq:XP_006354904.1	SEG:seg	UniParc:UPI0002962E73	UniProt:M1AE00	MapMan:2.3.6.1.5

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008025]

Coordinates

chr4:-:68476641..68483288

Molecular Weight (calculated)

26688.8 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.297

Length

240 amino acids

Sequence
(BLAST)

001: MEKMVLMRSL YRSICRRSTV FSATAAATTS AVNHQSLRHL HFSPQSFSAS PRNTVTECQH PFTMAMGSMR SFSEDVTHMP KIEDSEVKRA FKDLMAASWH
101: ELPDPVVYDA KNALSKTTDD KAGQEALANV FRAAEAVEEF TGILTSLKMD IDDAIGLSGE DVKPLSKEFS DALHTIFQRY NAYMSAFGPE EEYLRKKVEM
201: ELGTRMIHLK MRCSGLDAAW GKVTVLGTSG LAGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.