Factsheet for Os04t0418000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
mitochondrion: 19924544
plastid: 21433289
mitochondrion: 23027867
nucleus: 23777608
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 19924544 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	80.09	80.79
TraesCS2B01G314900.1	Wheat	mitochondrion	78.79	79.48
EER93643	Sorghum	mitochondrion	78.36	79.39
Zm00001d033554_P001	Maize	mitochondrion	77.06	78.41
EES01682	Sorghum	mitochondrion	77.06	78.07
TraesCS2D01G296500.1	Wheat	plastid	73.59	75.56
GSMUA_Achr10P...	Banana	mitochondrion	57.14	56.41
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	71.86	56.08
VIT_18s0001g10780.t01	Wine grape	mitochondrion	54.11	51.65
Zm00001d013526_P002	Maize	mitochondrion	75.76	51.02
Bra014079.1-P	Field mustard	mitochondrion	52.81	50.83
CDY17016	Canola	mitochondrion	52.38	50.42
Bra040955.1-P	Field mustard	plastid	51.95	50.21
CDY06735	Canola	plastid	51.52	49.79
GSMUA_Achr6P25260_001	Banana	mitochondrion	57.14	49.44
CDY17074	Canola	mitochondrion, plastid	51.08	49.37
KRH15341	Soybean	mitochondrion	49.35	49.14
KRH05703	Soybean	mitochondrion	47.19	48.44
GSMUA_Achr6P25290_001	Banana	mitochondrion	56.71	47.99
PGSC0003DMT400039927	Potato	mitochondrion	48.05	47.44
Solyc12g088900.1.1	Tomato	mitochondrion	47.62	47.01
CDY17833	Canola	plastid	52.38	46.54
PGSC0003DMT400020707	Potato	mitochondrion	48.05	46.25
Solyc04g079180.2.1	Tomato	plastid	48.05	46.25
AT1G47420.1	Thale cress	mitochondrion	51.08	45.91
CDX80719	Canola	mitochondrion	12.12	30.77
Bra030413.1-P	Field mustard	cytosol	10.39	26.37

Protein Annotations

MapMan:2.3.6.1.5	EntrezGene:4335816	EMBL:AK099124	EMBL:AK106155	EMBL:AK119714	ProteinID:BAF14685.1
ProteinID:BAS89168.1	ProteinID:CAE02910.3	ProteinID:CAE03169.1	InterPro:DUF4370	ProteinID:EAZ30714.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0005749	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0016020	GO:GO:0045273	EnsemblPlantsGene:Os04g0418000	EnsemblPlants:Os04t0418000-01
PFAM:PF14290	PANTHER:PTHR36139	UniProt:Q0JDA2	UniParc:UPI000021C9C4	RefSeq:XP_015637221.1	SEG:seg

Description

SUCCINATE DEHYDROGENASE SUBUNIT 5Conserved hypothetical protein. (Os04t0418000-01)

Coordinates

chr4:+:20653716..20657117

Molecular Weight (calculated)

24584.6 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.033

Length

231 amino acids

Sequence
(BLAST)

001: MAAALRSSCA AARRLLRISP AALSTLTAAS SRPAAVAPLA RPIAAAAVSG GNNAFSWNLR RLFSSNEKHL PAISDPEVES AFKDLMAASW TGLPDSLVIE
101: AKKAASKATD DKAGKEALLN VFRAAEACEE FGGVLVTLRM ALDDLCGITG ENVGPLPGYI EDAVKSAYKR YMKYLESFGP EENYLRKKVE NELGTKMIHL
201: KMRCSGVGSE WGKITLIGTS GISGSYVELR A

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.