Factsheet for VIT_18s0001g10780.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05703	Soybean	mitochondrion	57.44	61.78
KRH15341	Soybean	mitochondrion	58.68	61.21
Solyc04g079180.2.1	Tomato	plastid	59.92	60.42
PGSC0003DMT400020707	Potato	mitochondrion	58.26	58.75
Solyc12g088900.1.1	Tomato	mitochondrion	56.2	58.12
PGSC0003DMT400039927	Potato	mitochondrion	56.2	58.12
Bra040955.1-P	Field mustard	plastid	56.61	57.32
CDY06735	Canola	plastid	56.61	57.32
Bra014079.1-P	Field mustard	mitochondrion	56.61	57.08
CDY17016	Canola	mitochondrion	56.61	57.08
CDY17074	Canola	mitochondrion, plastid	56.2	56.9
Os04t0418000-01	Rice	mitochondrion	51.65	54.11
TraesCS2B01G314900.1	Wheat	mitochondrion	50.83	53.71
EER93643	Sorghum	mitochondrion	50.41	53.51
EES01682	Sorghum	mitochondrion	50.41	53.51
Zm00001d033554_P001	Maize	mitochondrion	50.0	53.3
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	50.41	53.28
CDY17833	Canola	plastid	56.61	52.69
GSMUA_Achr10P...	Banana	mitochondrion	50.83	52.56
TraesCS2D01G296500.1	Wheat	plastid	48.76	52.44
TraesCS4A01G418100.1	Wheat	plastid	51.24	50.82
AT1G47420.1	Thale cress	mitochondrion	53.72	50.58
TraesCS7D01G064400.1	Wheat	plastid	50.83	50.41
GSMUA_Achr6P25290_001	Banana	mitochondrion	53.31	47.25
GSMUA_Achr6P25260_001	Banana	mitochondrion	51.24	46.44
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	52.48	42.91
CDX80719	Canola	mitochondrion	13.22	35.16
Bra030413.1-P	Field mustard	cytosol	13.22	35.16
Zm00001d013526_P002	Maize	mitochondrion	49.59	34.99

Protein Annotations

EntrezGene:100253931	wikigene:100253931	MapMan:2.3.6.1.5	UniProt:A5B894	EMBL:AM450130	ProteinID:CAN63226
ProteinID:CAN63226.1	ProteinID:CBI19540	ProteinID:CBI19540.3	InterPro:DUF4370	EMBL:FN595227	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0005749
GO:GO:0008150	GO:GO:0009719	GO:GO:0009735	GO:GO:0016020	GO:GO:0045273	EntrezGene:LOC100253931
wikigene:LOC100253931	PFAM:PF14290	PANTHER:PTHR36139	UniParc:UPI0001520857	ArrayExpress:VIT_18s0001g10780	EnsemblPlantsGene:VIT_18s0001g10780
EnsemblPlants:VIT_18s0001g10780.t01	unigene:Vvi.8895	RefSeq:XP_002284591	RefSeq:XP_002284591.1	:	:

Description

No Description!

Coordinates

chr18:-:9065412..9069795

Molecular Weight (calculated)

26721.0 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.064

Length

242 amino acids

Sequence
(BLAST)

001: MERMVLLRSL FRSAAFRSCR FSAVVNHHQQ LRHYASSRSL FNLFAPTAIA SRQALPSDCR TPFAVSIGST RSFSEDVSHL PVIKDPEIQT VFKDLMAASW
101: DELPDSVISS ANKVLSKNTD DKAGQEALAN VFRAAEAAVE FGGILVTLRM EIDDLVGISG ENVKPLPDEF VNALVTVFKR YTTYLDSFGP DEAFLRKKVE
201: MELGTKMIHL KLRCSDLGAE WGKVTLLGTS GLSGSYVEQR AP

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.