Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G064400.1 | Wheat | plastid | 90.16 | 90.16 |
| EER93643 | Sorghum | mitochondrion | 66.8 | 71.49 |
| EES01682 | Sorghum | mitochondrion | 65.98 | 70.61 |
| Zm00001d033554_P001 | Maize | mitochondrion | 65.16 | 70.04 |
| TraesCS2A01G298400.1 | Wheat | mitochondrion, plastid | 65.16 | 69.43 |
| HORVU7Hr1G012370.2 | Barley | cytosol, nucleus | 72.54 | 59.8 |
| GSMUA_Achr10P... | Banana | mitochondrion | 53.28 | 55.56 |
| CDY17074 | Canola | mitochondrion, plastid | 50.41 | 51.46 |
| VIT_18s0001g10780.t01 | Wine grape | mitochondrion | 50.82 | 51.24 |
| Bra040955.1-P | Field mustard | plastid | 50.0 | 51.05 |
| CDY06735 | Canola | plastid | 50.0 | 51.05 |
| PGSC0003DMT400039927 | Potato | mitochondrion | 48.77 | 50.85 |
| Bra014079.1-P | Field mustard | mitochondrion | 49.59 | 50.42 |
| CDY17016 | Canola | mitochondrion | 49.59 | 50.42 |
| Solyc12g088900.1.1 | Tomato | mitochondrion | 47.95 | 50.0 |
| KRH15341 | Soybean | mitochondrion | 47.13 | 49.57 |
| GSMUA_Achr6P25260_001 | Banana | mitochondrion | 53.69 | 49.06 |
| KRH05703 | Soybean | mitochondrion | 45.08 | 48.89 |
| GSMUA_Achr6P25290_001 | Banana | mitochondrion | 53.69 | 47.99 |
| Solyc04g079180.2.1 | Tomato | plastid | 46.72 | 47.5 |
| PGSC0003DMT400020707 | Potato | mitochondrion | 46.31 | 47.08 |
| Zm00001d013526_P002 | Maize | mitochondrion | 65.98 | 46.94 |
| CDY17833 | Canola | plastid | 50.0 | 46.92 |
| AT1G47420.1 | Thale cress | mitochondrion | 47.54 | 45.14 |
| Bra030413.1-P | Field mustard | cytosol | 11.07 | 29.67 |
| CDX80719 | Canola | mitochondrion | 9.43 | 25.27 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G418100.1 | EnsemblPlantsGene:TraesCS4A01G418100 | InterPro:DUF4370 | PANTHER:PTHR36139 | PFAM:PF14290 | SEG:seg |
| MapMan:2.3.6.1.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:688092065..688095665
Molecular Weight (calculated)
26051.0 Da
IEP (calculated)
7.958
GRAVY (calculated)
-0.193
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSARAAAS AARSALRRAP LAASSSSSAA GVLRRSAAAG LETRMPLHSA ASAARLGSCI TRDGNNAFSW NSRRMFSSNE KHLPAISDPK IETAFKDLMA
101: ASWNELPGSL VEEAKKAVSM ATDDKAGQEA LENVFRAAEA CEEFSGVLVT LRMALDDLCG LTGENVGPLP GYLEEAVKSA YSRYMTYLES FGPEEHYLRK
201: KVESELGTKM IHLKMRCSGI GSEWGKITLI GTSGISGSYV EMRA
101: ASWNELPGSL VEEAKKAVSM ATDDKAGQEA LENVFRAAEA CEEFSGVLVT LRMALDDLCG LTGENVGPLP GYLEEAVKSA YSRYMTYLES FGPEEHYLRK
201: KVESELGTKM IHLKMRCSGI GSEWGKITLI GTSGISGSYV EMRA
001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA
Arabidopsis Description
SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.