CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17016	Canola	mitochondrion	90.38	97.92
Bra014079.1-P	Field mustard	mitochondrion	90.0	97.5
CDY06735	Canola	plastid	78.08	84.94
CDY17074	Canola	mitochondrion, plastid	77.31	84.1
AT1G47420.1	Thale cress	mitochondrion	63.85	64.59
KRH05703	Soybean	mitochondrion	52.31	60.44
KRH15341	Soybean	mitochondrion	51.92	58.19
Solyc12g088900.1.1	Tomato	mitochondrion	52.31	58.12
PGSC0003DMT400039927	Potato	mitochondrion	52.31	58.12
Solyc04g079180.2.1	Tomato	plastid	52.69	57.08
PGSC0003DMT400020707	Potato	mitochondrion	52.31	56.67
VIT_18s0001g10780.t01	Wine grape	mitochondrion	52.69	56.61
Zm00001d033554_P001	Maize	mitochondrion	46.54	53.3
EER93643	Sorghum	mitochondrion	46.15	52.63
TraesCS2D01G296500.1	Wheat	plastid	45.38	52.44
Os04t0418000-01	Rice	mitochondrion	46.54	52.38
TraesCS2B01G314900.1	Wheat	mitochondrion	45.77	51.97
EES01682	Sorghum	mitochondrion	45.38	51.75
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	45.0	51.09
TraesCS7D01G064400.1	Wheat	plastid	47.69	50.82
TraesCS4A01G418100.1	Wheat	plastid	46.92	50.0
GSMUA_Achr10P...	Banana	mitochondrion	45.0	50.0
CDX80719	Canola	mitochondrion	16.15	46.15
GSMUA_Achr6P25290_001	Banana	mitochondrion	45.0	42.86
GSMUA_Achr6P25260_001	Banana	mitochondrion	43.46	42.32
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	48.08	42.23
Zm00001d013526_P002	Maize	mitochondrion	46.54	35.28

Protein Annotations

EnsemblPlants:CDY17833	EnsemblPlantsGene:GSBRNA2T00002151001	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	ProteinID:CDY17833
ProteinID:CDY17833.1	UniParc:UPI0004EF26D5	UniPathway:UPA00223	UniProt:A0A078FZN7	MapMan:2.3.6.1.5	:

Description

BnaC08g04470DBnaC08g04470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZN7]

Coordinates

chrLK032078:+:569106..571042

Molecular Weight (calculated)

28287.9 Da

IEP (calculated)

9.065

GRAVY (calculated)

-0.207

Length

260 amino acids

Sequence
(BLAST)

001: MGFNGPDPLT FAFRLTTTKK STMLLVRSLC RTAAAASVAT LRSLRSAPPN QLLRNRSLLT GGFFAVSSFP SNRTPYDCRY PRAIGIGSVR NFSEDVSHMP
101: ELKDSDVLNA FKGLMAADWS ALPSAVVNEA KKAVSKNTDD KAGQEALTNV FRAAEAVEEF GGILNSLKME IDDSIGMSGE DVKSLPEDIT KALRLAYHRY
201: ATYLDAFGPE EVYLKKKVET ELGTKMIHLK MRCSGLGSEW GKVTVLGTSG LSGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.