Factsheet for Solyc04g079180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020707	Potato	mitochondrion	96.67	96.67
Solyc12g088900.1.1	Tomato	mitochondrion	73.33	75.21
KRH05703	Soybean	mitochondrion	61.67	65.78
KRH15341	Soybean	mitochondrion	62.5	64.66
VIT_18s0001g10780.t01	Wine grape	mitochondrion	60.42	59.92
Bra040955.1-P	Field mustard	plastid	58.75	59.0
CDY06735	Canola	plastid	58.75	59.0
CDY17074	Canola	mitochondrion, plastid	58.75	59.0
CDY17016	Canola	mitochondrion	56.67	56.67
Bra014079.1-P	Field mustard	mitochondrion	56.25	56.25
AT1G47420.1	Thale cress	mitochondrion	57.5	53.7
CDY17833	Canola	plastid	57.08	52.69
EER93643	Sorghum	mitochondrion	47.08	49.56
EES01682	Sorghum	mitochondrion	46.25	48.68
Zm00001d033554_P001	Maize	mitochondrion	45.83	48.46
GSMUA_Achr10P...	Banana	mitochondrion	47.08	48.29
Os04t0418000-01	Rice	mitochondrion	46.25	48.05
TraesCS2A01G298400.1	Wheat	mitochondrion, plastid	45.42	47.6
TraesCS7D01G064400.1	Wheat	plastid	48.33	47.54
TraesCS2B01G314900.1	Wheat	mitochondrion	45.0	47.16
TraesCS4A01G418100.1	Wheat	plastid	47.5	46.72
TraesCS2D01G296500.1	Wheat	plastid	42.92	45.78
GSMUA_Achr6P25290_001	Banana	mitochondrion	45.83	40.29
GSMUA_Achr6P25260_001	Banana	mitochondrion	44.58	40.07
HORVU7Hr1G012370.2	Barley	cytosol, nucleus	47.08	38.18
CDX80719	Canola	mitochondrion	13.75	36.26
Bra030413.1-P	Field mustard	cytosol	13.75	36.26
Zm00001d013526_P002	Maize	mitochondrion	48.33	33.82

Protein Annotations

EnsemblPlants:Solyc04g079180.2.1	EnsemblPlantsGene:Solyc04g079180.2	InterPro:DUF4370	PANTHER:PTHR36139	PFAM:PF14290	SEG:seg
UniParc:UPI0002766FD9	UniProt:K4BV02	MapMan:2.3.6.1.5	:	:	:

Description

No Description!

Coordinates

chr4:-:63740841..63743407

Molecular Weight (calculated)

26634.7 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.288

Length

240 amino acids

Sequence
(BLAST)

001: MEKMVLMRSL YRSICRRSTV FSATAAATTS AVNHQSLRHL HFSPQSFSAS PRNAITECQH PFTMAMGSMR SFSEDVTHMP NIEDSEVKRA FKDLMAASWD
101: ELPDPVVYDA KNALSKTTDD KAGQEALANV FRAAEAVEEF TGILTSLKME IDDAIGLSGE DVKPLSKEFS DALHTIFQRY NSYLSAFGPD EEYLRKKVEM
201: ELGTRMIHLK MRCSGLDAAW GKVTVLGTSG LAGSYVEQRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.