Factsheet for HORVU7Hr1G012370.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93643	Sorghum	mitochondrion	57.43	74.56
EES01682	Sorghum	mitochondrion	56.76	73.68
Zm00001d033554_P001	Maize	mitochondrion	56.08	73.13
TraesCS7D01G064400.1	Wheat	plastid	59.8	72.54
TraesCS4A01G418100.1	Wheat	plastid	59.8	72.54
Os04t0418000-01	Rice	mitochondrion	56.08	71.86
TraesCS2B01G314900.1	Wheat	mitochondrion	54.39	70.31
GSMUA_Achr10P...	Banana	mitochondrion	44.93	56.84
VIT_18s0001g10780.t01	Wine grape	mitochondrion	42.91	52.48
Zm00001d013526_P002	Maize	mitochondrion	59.12	51.02
Bra014079.1-P	Field mustard	mitochondrion	41.22	50.83
CDY17016	Canola	mitochondrion	41.22	50.83
PGSC0003DMT400039927	Potato	mitochondrion	39.86	50.43
GSMUA_Achr6P25260_001	Banana	mitochondrion	45.27	50.19
KRH15341	Soybean	mitochondrion	39.19	50.0
Solyc12g088900.1.1	Tomato	mitochondrion	39.53	50.0
CDY17074	Canola	mitochondrion, plastid	40.2	49.79
KRH05703	Soybean	mitochondrion	37.84	49.78
GSMUA_Achr6P25290_001	Banana	mitochondrion	45.61	49.45
CDY06735	Canola	plastid	39.86	49.37
Bra040955.1-P	Field mustard	plastid	39.86	49.37
CDY17833	Canola	plastid	42.23	48.08
PGSC0003DMT400020707	Potato	mitochondrion	38.18	47.08
Solyc04g079180.2.1	Tomato	plastid	38.18	47.08
AT1G47420.1	Thale cress	mitochondrion	38.51	44.36
CDX80719	Canola	mitochondrion	8.45	27.47
Bra030413.1-P	Field mustard	cytosol	8.11	26.37

Protein Annotations

EnsemblPlants:HORVU7Hr1G012370.2	EnsemblPlantsGene:HORVU7Hr1G012370	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0005749	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735
GO:GO:0016020	GO:GO:0045273	InterPro:DUF4370	ncoils:Coil	PANTHER:PTHR36139	PFAM:PF14290
ProteinID:AAL77110.1	SEG:seg	UniParc:UPI000B4621AA	UniProt:A0A287VIR8	MapMan:2.3.6.1.5	:

Description

No Description!

Coordinates

chrchr7H:+:17085554..17089040

Molecular Weight (calculated)

32449.6 Da

IEP (calculated)

9.187

GRAVY (calculated)

-0.650

Length

296 amino acids

Sequence
(BLAST)

001: VRQQPPKPQA RERKGEEEEK RWHRRPAPPP PPRDRLSAGR PSPPRPPPPP PPEPPGSSAG KASATLSKRS VDLLVGRRLR ARAHAEFPCR SAAAGLATRV
101: PLHSAARLGS CVTRDGNNAF SWNSRRMFSS NEKHLPPISD PEIETAFKDL MAASWNELPG SLVEEAKKEV SKATDDKAGQ EALENVFRAA EACEEFSGVL
201: VTLRMALDDL CGLTGENVGP LPGYLEEAVK SAYSRYMTYL ESFGPEEHYL RKKVETELGT KMIHLKMRCS GIGSEWGKIT LIGTSGISGS YVEMRA

Best Arabidopsis Sequence Match ( AT1G47420.1 )
(BLAST)

001: MGTLGRAIHT VGNRIRGTAQ AQARVGSLLQ GSHHIEKHLS RHRTLITVAP NASVIGDVQI NKGSFISYAS VSRDLQYPRA MGMGQVRRFS EDVSHMPEME
101: DSDVLNAFKD LMAADWAELP SAVVKDAKTA ISKNTDDKAG QEALKNVFRA AEAVEEFGGI LTSIKMEIDD SIGMSGEGVK PLPNDITDAL RTAYQRYAEY
201: LDSFEPEEVY LKKKVEMELG TKMIHLKMRC SGLGSEWGKV TVLGTSGLSG SYVEQRA

Arabidopsis Description

SDH5Succinate dehydrogenase subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SX77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.