Factsheet for Bra009392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012100.1-P
Bra014079.1-P
Bra018622.1-P
Bra028469.1-P
Bra030413.1-P
Bra030729.1-P
Bra040955.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32210.1	Bra018622.1-P	AT1G08480.1	12970493
AT4G32210.1	Bra030729.1-P	AT1G08480.1	12970493
AT4G32210.1	Bra014079.1-P	AT1G47420.1	12970493
AT4G32210.1	Bra030413.1-P	AT1G47420.1	12970493
AT4G32210.1	Bra040955.1-P	AT1G47420.1	12970493
AT4G32210.1	Bra028469.1-P	AT3G27380.1	12970493
AT4G32210.1	Bra028469.1-P	AT5G40650.1	12970493
AT4G32210.1	Bra012100.1-P	AT5G66760.1	12970493
AT5G09600.1	Bra018622.1-P	AT1G08480.1	12970493
AT5G09600.1	Bra030729.1-P	AT1G08480.1	12970493
AT5G09600.1	Bra014079.1-P	AT1G47420.1	12970493
AT5G09600.1	Bra030413.1-P	AT1G47420.1	12970493
AT5G09600.1	Bra040955.1-P	AT1G47420.1	12970493
AT5G09600.1	Bra028469.1-P	AT3G27380.1	12970493
AT5G09600.1	Bra028469.1-P	AT5G40650.1	12970493
AT5G09600.1	Bra012100.1-P	AT5G66760.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69897	Canola	mitochondrion	100.0	100.0
AT4G32210.1	Thale cress	mitochondrion	74.88	74.18
AT5G09600.1	Thale cress	mitochondrion	74.88	74.18
PGSC0003DMT400021489	Potato	cytosol, endoplasmic reticulum, extracellular, mitochondrion	18.96	37.04
GSMUA_AchrUn_...	Banana	extracellular	12.8	30.0
KRH56129	Soybean	mitochondrion, plastid	27.49	23.77
KRH25379	Soybean	mitochondrion	27.96	23.69

Protein Annotations

Gene3D:1.20.1300.10	MapMan:2.3.6.1.3	EnsemblPlantsGene:Bra009392	EnsemblPlants:Bra009392.1	EnsemblPlants:Bra009392.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016627	GO:GO:0055114	InterPro:IPR034804	UniProt:M4CYU5	PFAM:PF01127	PANTHER:PTHR10978
PANTHER:PTHR10978:SF5	InterPro:SQR/QFR_C/D	SUPFAM:SSF81343	InterPro:SuccDH_FuR_B_TM-su	TMHMM:TMhelix	UniParc:UPI0002547675

Description

AT4G32210 (E=2e-079) SDH3-2 | SDH3-2; succinate dehydrogenase

Coordinates

chrA10:+:16448123..16449362

Molecular Weight (calculated)

23023.9 Da

IEP (calculated)

10.141

GRAVY (calculated)

-0.056

Length

211 amino acids

Sequence
(BLAST)

001: MAATALLRSI RRRDVVSAPL SVYKSLAGNA QPSFGNGQNY ASLCRAFGSR AGVNENVGTG FGTSNISNAI REEGEHSKAT MNAMGAHLRA LGVGTPRRVL
101: STIAEGIKMT EEDQTSPKPQ SFRPLSPHLT VYQPQKNSML SIFNRISGIY LTGVFYGGYL LYLKMGMICL TYPAFYQVHY HVQQQLPVIT SVTALAALYH
201: TIKSIHSLLT H

Best Arabidopsis Sequence Match ( AT4G32210.1 )
(BLAST)

001: MAATALFRSI RRRDVVSAPL SVYKSLAGNA QPSWGSSYIG QNYASFSRAF GSKPVVNDIL GTGLGTNNAI REEREKSKST EAAIVGAQLT RSFRALDVGT
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH

Arabidopsis Description

SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.