Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- extracellular 3
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021489 | Potato | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 67.78 | 56.48 |
| KRH56129 | Soybean | mitochondrion, plastid | 38.89 | 14.34 |
| KRH25379 | Soybean | mitochondrion | 38.89 | 14.06 |
| Bra009392.1-P | Field mustard | mitochondrion | 30.0 | 12.8 |
| CDX69897 | Canola | mitochondrion | 30.0 | 12.8 |
| AT4G32210.1 | Thale cress | mitochondrion | 30.0 | 12.68 |
| AT5G09600.1 | Thale cress | mitochondrion | 30.0 | 12.68 |
| CDY21589 | Canola | mitochondrion | 30.0 | 12.68 |
Protein Annotations
| Gene3D:1.20.1300.10 | MapMan:2.3.6.1.3 | GO:GO:0000104 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0045281 | EnsemblPlantsGene:GSMUA_AchrUn_randomG24250_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP24250_001 | EnsemblPlants:GSMUA_AchrUn_randomT24250_001 | InterPro:IPR034804 | UniProt:M0UBY3 | PFAM:PF01127 | PIRSF:PIRSF000178 |
| PANTHER:PTHR10978 | PANTHER:PTHR10978:SF5 | InterPro:SQR/QFR_C/D | SUPFAM:SSF81343 | InterPro:SuccDH_FuR_B_TM-su | InterPro:Succ_DH_cytb556 |
| TMHMM:TMhelix | UniParc:UPI000296D610 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24250_001]
Coordinates
chrchrUn_random:+:120454882..120455154
Molecular Weight (calculated)
10155.8 Da
IEP (calculated)
9.796
GRAVY (calculated)
0.871
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MNILRTLSPH LPIVKPQLTS TFPISHRISG AFLATIVSFF YLLCLKIGLI CFTYEKINLF FFYSSKVLKA FPLKLDACSV ALTLVYVSGY
001: MLNLPGVVHT LVRTMQVSPE LSGRSKPVVN DILGTGLGTN NAIREEREKS KSTEAAIVGA QLTRSFRALD VGTSKRLFST ISGDIKTTQE EPKIKSFRPL
101: SPHLSVYQPQ MNSMLSIFNR ISGVYLTGVT FAGYLLYLKM GMICLTYPSF YQVLYHTQQQ LPVITSVTAL AAIYHTIKST HSLLTH
101: SPHLSVYQPQ MNSMLSIFNR ISGVYLTGVT FAGYLLYLKM GMICLTYPSF YQVLYHTQQQ LPVITSVTAL AAIYHTIKST HSLLTH
Arabidopsis Description
SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.