CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80719
CDX81369
CDX93559
CDX95057
CDX97492
CDY06735
CDY17016
CDY17074
CDY17833
CDY30754
CDY31141
CDY49839
CDY53847
CDY57124

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32210.1	CDX93559	AT1G08480.1	12970493
AT4G32210.1	CDX95057	AT1G08480.1	12970493
AT4G32210.1	CDX97492	AT1G08480.1	12970493
AT4G32210.1	CDY31141	AT1G08480.1	12970493
AT4G32210.1	CDX80719	AT1G47420.1	12970493
AT4G32210.1	CDY06735	AT1G47420.1	12970493
AT4G32210.1	CDY17016	AT1G47420.1	12970493
AT4G32210.1	CDY17074	AT1G47420.1	12970493
AT4G32210.1	CDY17833	AT1G47420.1	12970493
AT4G32210.1	CDX81369	AT5G66760.1	12970493
AT4G32210.1	CDY30754	AT5G66760.1	12970493
AT4G32210.1	CDY49839	AT5G66760.1	12970493
AT4G32210.1	CDY53847	AT5G66760.1	12970493
AT4G32210.1	CDY57124	AT5G66760.1	12970493
AT5G09600.1	CDX93559	AT1G08480.1	12970493
AT5G09600.1	CDX95057	AT1G08480.1	12970493
AT5G09600.1	CDX97492	AT1G08480.1	12970493
AT5G09600.1	CDY31141	AT1G08480.1	12970493
AT5G09600.1	CDX80719	AT1G47420.1	12970493
AT5G09600.1	CDY06735	AT1G47420.1	12970493
AT5G09600.1	CDY17016	AT1G47420.1	12970493
AT5G09600.1	CDY17074	AT1G47420.1	12970493
AT5G09600.1	CDY17833	AT1G47420.1	12970493
AT5G09600.1	CDX81369	AT5G66760.1	12970493
AT5G09600.1	CDY30754	AT5G66760.1	12970493
AT5G09600.1	CDY49839	AT5G66760.1	12970493
AT5G09600.1	CDY53847	AT5G66760.1	12970493
AT5G09600.1	CDY57124	AT5G66760.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69897	Canola	mitochondrion	95.31	96.21
AT4G32210.1	Thale cress	mitochondrion	74.18	74.18
AT5G09600.1	Thale cress	mitochondrion	74.18	74.18
PGSC0003DMT400021489	Potato	cytosol, endoplasmic reticulum, extracellular, mitochondrion	18.78	37.04
GSMUA_AchrUn_...	Banana	extracellular	12.68	30.0
KRH56129	Soybean	mitochondrion, plastid	27.23	23.77
KRH25379	Soybean	mitochondrion	27.23	23.29

Protein Annotations

Gene3D:1.20.1300.10	MapMan:2.3.6.1.3	GO:A0A078G855	UniProt:A0A078G855	EnsemblPlants:CDY21589	ProteinID:CDY21589
ProteinID:CDY21589.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00016055001	InterPro:IPR034804
PFAM:PF01127	PANTHER:PTHR10978	PANTHER:PTHR10978:SF5	InterPro:SQR/QFR_C/D	SUPFAM:SSF81343	InterPro:SuccDH_FuR_B_TM-su
TMHMM:TMhelix	UniPathway:UPA00223	UniParc:UPI0004EF3E49	:	:	:

Description

BnaC09g47030DBnaC09g47030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G855]

Coordinates

chrLK032122:+:369962..371595

Molecular Weight (calculated)

23250.1 Da

IEP (calculated)

10.190

GRAVY (calculated)

-0.067

Length

213 amino acids

Sequence
(BLAST)

001: MAATAILRSI RRRDVVSAPL SVYKSLAGNA QPSLGSYTGQ NYASLCRAFG SRAGVNENVG TGFGTSNISN AVREEREHSK ATVNATGAHL RALGVGTPRR
101: VLSTIAEGIK MTEEDQTSPK PQSFRPLSPH LTVYQPQKNS MLSIFNRISG IYLTGVFYGG YLLYLKMGMI CLTYPAFYQV HYHVQQQLPV ITSVTALAAL
201: YHTIKSIHSL LTH

Best Arabidopsis Sequence Match ( AT4G32210.1 )
(BLAST)

001: MAATALFRSI RRRDVVSAPL SVYKSLAGNA QPSWGSSYIG QNYASFSRAF GSKPVVNDIL GTGLGTNNAI REEREKSKST EAAIVGAQLT RSFRALDVGT
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH

Arabidopsis Description

SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.