Factsheet for PGSC0003DMT400021489

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, extracellular, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007733
PGSC0003DMT400015105
PGSC0003DMT400020707
PGSC0003DMT400032862
PGSC0003DMT400038576
PGSC0003DMT400039927
PGSC0003DMT400064279

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32210.1	PGSC0003DMT400007733	AT1G08480.1	12970493
AT4G32210.1	PGSC0003DMT400015105	AT1G08480.1	12970493
AT4G32210.1	PGSC0003DMT400020707	AT1G47420.1	12970493
AT4G32210.1	PGSC0003DMT400039927	AT1G47420.1	12970493
AT4G32210.1	PGSC0003DMT400032862	AT3G27380.1	12970493
AT4G32210.1	PGSC0003DMT400064279	AT3G27380.1	12970493
AT4G32210.1	PGSC0003DMT400032862	AT5G40650.1	12970493
AT4G32210.1	PGSC0003DMT400064279	AT5G40650.1	12970493
AT4G32210.1	PGSC0003DMT400038576	AT5G66760.1	12970493
AT5G09600.1	PGSC0003DMT400007733	AT1G08480.1	12970493
AT5G09600.1	PGSC0003DMT400015105	AT1G08480.1	12970493
AT5G09600.1	PGSC0003DMT400020707	AT1G47420.1	12970493
AT5G09600.1	PGSC0003DMT400039927	AT1G47420.1	12970493
AT5G09600.1	PGSC0003DMT400032862	AT3G27380.1	12970493
AT5G09600.1	PGSC0003DMT400064279	AT3G27380.1	12970493
AT5G09600.1	PGSC0003DMT400032862	AT5G40650.1	12970493
AT5G09600.1	PGSC0003DMT400064279	AT5G40650.1	12970493
AT5G09600.1	PGSC0003DMT400038576	AT5G66760.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	56.48	67.78
KRH56129	Soybean	mitochondrion, plastid	49.07	21.72
KRH25379	Soybean	mitochondrion	49.07	21.29
AT4G32210.1	Thale cress	mitochondrion	37.96	19.25
AT5G09600.1	Thale cress	mitochondrion	37.96	19.25
Bra009392.1-P	Field mustard	mitochondrion	37.04	18.96
CDX69897	Canola	mitochondrion	37.04	18.96
CDY21589	Canola	mitochondrion	37.04	18.78

Protein Annotations

Gene3D:1.20.1300.10	MapMan:2.3.6.1.3	GO:GO:0000104	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627
GO:GO:0022900	GO:GO:0045281	GO:GO:0046872	InterPro:IPR034804	UniProt:M1AF68	PFAM:PF01127
EnsemblPlantsGene:PGSC0003DMG402008334	PGSC:PGSC0003DMG402008334	EnsemblPlants:PGSC0003DMT400021489	PIRSF:PIRSF000178	ScanProsite:PS01000	PANTHER:PTHR10978
PANTHER:PTHR10978:SF5	InterPro:SQR/QFR_C/D	SUPFAM:SSF81343	InterPro:SuccDH_FuR_B_TM-su	InterPro:Succ_DH_cyt_bsu_CS	InterPro:Succ_DH_cytb556
TIGRFAMs:TIGR02970	TMHMM:TMhelix	UniParc:UPI000296A6CB	:	:	:

Description

Succinate dehydrogenase subunit 3 [Source:PGSC_GENE;Acc:PGSC0003DMG402008334]

Coordinates

chr3:-:37178547..37179375

Molecular Weight (calculated)

12659.8 Da

IEP (calculated)

10.221

GRAVY (calculated)

0.570

Length

108 amino acids

Sequence
(BLAST)

001: MNILRPLSPH LPIYKPQLTS TFSISHRISG AFLATIVFFF YLLCLKIGLI CFTYENFYQF FFYSSKLILI SVETTALALS YHLYNGVRHL LTDFSGFFFL
101: RIGRKRLK

Best Arabidopsis Sequence Match ( AT5G09600.2 )
(BLAST)

001: MLNLPGVVHT LVRTMQVSPE LSGRSKPVVN DILGTGLGTN NAIREEREKS KSTEAAIVGA QLTRSFRALD VGTSKRLFST ISGDIKTTQE EPKIKSFRPL
101: SPHLSVYQPQ MNSMLSIFNR ISGVYLTGVT FAGYLLYLKM GMICLTYPSF YQVLYHTQQQ LPVITSVTAL AAIYHTIKST HSLLTH

Arabidopsis Description

SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.