CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89352
KRG94380
KRH05703
KRH07075
KRH15341
KRH28665
KRH69929
KRH76805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32210.1	KRG89352	AT1G08480.1	12970493
AT4G32210.1	KRH05703	AT1G47420.1	12970493
AT4G32210.1	KRH15341	AT1G47420.1	12970493
AT4G32210.1	KRG94380	AT3G27380.1	12970493
AT4G32210.1	KRH07075	AT3G27380.1	12970493
AT4G32210.1	KRG94380	AT5G40650.1	12970493
AT4G32210.1	KRH07075	AT5G40650.1	12970493
AT4G32210.1	KRH28665	AT5G66760.1	12970493
AT4G32210.1	KRH69929	AT5G66760.1	12970493
AT4G32210.1	KRH76805	AT5G66760.1	12970493
AT5G09600.1	KRG89352	AT1G08480.1	12970493
AT5G09600.1	KRH05703	AT1G47420.1	12970493
AT5G09600.1	KRH15341	AT1G47420.1	12970493
AT5G09600.1	KRG94380	AT3G27380.1	12970493
AT5G09600.1	KRH07075	AT3G27380.1	12970493
AT5G09600.1	KRG94380	AT5G40650.1	12970493
AT5G09600.1	KRH07075	AT5G40650.1	12970493
AT5G09600.1	KRH28665	AT5G66760.1	12970493
AT5G09600.1	KRH69929	AT5G66760.1	12970493
AT5G09600.1	KRH76805	AT5G66760.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56129	Soybean	mitochondrion, plastid	91.16	93.03
PGSC0003DMT400021489	Potato	cytosol, endoplasmic reticulum, extracellular, mitochondrion	21.29	49.07
GSMUA_AchrUn_...	Banana	extracellular	14.06	38.89
AT4G32210.1	Thale cress	mitochondrion	24.5	28.64
AT5G09600.1	Thale cress	mitochondrion	24.5	28.64
Bra009392.1-P	Field mustard	mitochondrion	23.69	27.96
CDX69897	Canola	mitochondrion	23.69	27.96
CDY21589	Canola	mitochondrion	23.29	27.23

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:1.20.1300.10	EntrezGene:100499683	MapMan:2.3.6.1.3	Gene3D:3.20.19.10	EMBL:ACUP02007247
InterPro:Aconitase/3IPM_dehydase_swvl	EMBL:BT089141	UniProt:C6SVE8	EnsemblPlantsGene:GLYMA_12G099000	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005749
GO:GO:0006091	GO:GO:0006121	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	InterPro:IPR015928	InterPro:IPR034804	EnsemblPlants:KRH25379
ProteinID:KRH25379	ProteinID:KRH25379.1	PFAM:PF01127	PANTHER:PTHR10978	InterPro:SQR/QFR_C/D	SUPFAM:SSF81343
InterPro:SuccDH_FuR_B_TM-su	TMHMM:TMhelix	UniParc:UPI0001B1565F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:8576562..8580743

Molecular Weight (calculated)

27110.1 Da

IEP (calculated)

10.440

GRAVY (calculated)

0.179

Length

249 amino acids

Sequence
(BLAST)

001: MSWLLRSTKS KLLSSSSSLS RTFPSLSRSG PTLDLPQIGA ISPLPDLFHR NTATMPFAKE NASGGNLAGL PKVPANTLGS DSNAINSPRY KASGLDTNVL
101: AGARCVSGVW AAQGPMRLVV NTVMARSFER SMEAGTLGMI GHKRFMSDIP SKTSETNLSG FRPLSPHLPL YQPQLSSTLS IFNRIAGAFL AGVILLFYMI
201: YMKLGLVSLT YDSFYQFIFY SSKLNLLVME ISALAVSYHL YSAIRHLFL

Best Arabidopsis Sequence Match ( AT5G09600.2 )
(BLAST)

001: MLNLPGVVHT LVRTMQVSPE LSGRSKPVVN DILGTGLGTN NAIREEREKS KSTEAAIVGA QLTRSFRALD VGTSKRLFST ISGDIKTTQE EPKIKSFRPL
101: SPHLSVYQPQ MNSMLSIFNR ISGVYLTGVT FAGYLLYLKM GMICLTYPSF YQVLYHTQQQ LPVITSVTAL AAIYHTIKST HSLLTH

Arabidopsis Description

SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.