Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 8
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32210.1 | CDX93559 | AT1G08480.1 | 12970493 |
| AT4G32210.1 | CDX95057 | AT1G08480.1 | 12970493 |
| AT4G32210.1 | CDX97492 | AT1G08480.1 | 12970493 |
| AT4G32210.1 | CDY31141 | AT1G08480.1 | 12970493 |
| AT4G32210.1 | CDX80719 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | CDY06735 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | CDY17016 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | CDY17074 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | CDY17833 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | CDX81369 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | CDY30754 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | CDY49839 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | CDY53847 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | CDY57124 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | CDX93559 | AT1G08480.1 | 12970493 |
| AT5G09600.1 | CDX95057 | AT1G08480.1 | 12970493 |
| AT5G09600.1 | CDX97492 | AT1G08480.1 | 12970493 |
| AT5G09600.1 | CDY31141 | AT1G08480.1 | 12970493 |
| AT5G09600.1 | CDX80719 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | CDY06735 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | CDY17016 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | CDY17074 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | CDY17833 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | CDX81369 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | CDY30754 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | CDY49839 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | CDY53847 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | CDY57124 | AT5G66760.1 | 12970493 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009392.1-P | Field mustard | mitochondrion | 100.0 | 100.0 |
| CDY21589 | Canola | mitochondrion | 96.21 | 95.31 |
| AT4G32210.1 | Thale cress | mitochondrion | 74.88 | 74.18 |
| AT5G09600.1 | Thale cress | mitochondrion | 74.88 | 74.18 |
| PGSC0003DMT400021489 | Potato | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 18.96 | 37.04 |
| GSMUA_AchrUn_... | Banana | extracellular | 12.8 | 30.0 |
| KRH56129 | Soybean | mitochondrion, plastid | 27.49 | 23.77 |
| KRH25379 | Soybean | mitochondrion | 27.96 | 23.69 |
Protein Annotations
| EnsemblPlants:CDX69897 | EnsemblPlantsGene:GSBRNA2T00135966001 | Gene3D:1.20.1300.10 | GO:A0A078BZQ9 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016627 | InterPro:IPR034804 | InterPro:SQR/QFR_C/D | InterPro:SuccDH_FuR_B_TM-su |
| PANTHER:PTHR10978 | PANTHER:PTHR10978:SF5 | PFAM:PF01127 | ProteinID:CDX69897 | ProteinID:CDX69897.1 | SUPFAM:SSF81343 |
| TMHMM:TMhelix | UniParc:UPI0002547675 | UniPathway:UPA00223 | MapMan:2.3.6.1.3 | : | : |
Description
BnaA10g22460D
Coordinates
chrLK031790:-:2275966..2277647
Molecular Weight (calculated)
23023.9 Da
IEP (calculated)
10.141
GRAVY (calculated)
-0.056
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATALLRSI RRRDVVSAPL SVYKSLAGNA QPSFGNGQNY ASLCRAFGSR AGVNENVGTG FGTSNISNAI REEGEHSKAT MNAMGAHLRA LGVGTPRRVL
101: STIAEGIKMT EEDQTSPKPQ SFRPLSPHLT VYQPQKNSML SIFNRISGIY LTGVFYGGYL LYLKMGMICL TYPAFYQVHY HVQQQLPVIT SVTALAALYH
201: TIKSIHSLLT H
101: STIAEGIKMT EEDQTSPKPQ SFRPLSPHLT VYQPQKNSML SIFNRISGIY LTGVFYGGYL LYLKMGMICL TYPAFYQVHY HVQQQLPVIT SVTALAALYH
201: TIKSIHSLLT H
001: MAATALFRSI RRRDVVSAPL SVYKSLAGNA QPSWGSSYIG QNYASFSRAF GSKPVVNDIL GTGLGTNNAI REEREKSKST EAAIVGAQLT RSFRALDVGT
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH
Arabidopsis Description
SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.