CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69897
CDX80719
CDX93559
CDX95057
CDX97492
CDY06735
CDY17016
CDY17074
CDY17833
CDY21589
CDY31141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	CDX93559	AT1G08480.1	12970493
AT5G66760.1	CDX95057	AT1G08480.1	12970493
AT5G66760.1	CDX97492	AT1G08480.1	12970493
AT5G66760.1	CDY31141	AT1G08480.1	12970493
AT5G66760.1	CDX80719	AT1G47420.1	12970493
AT5G66760.1	CDY06735	AT1G47420.1	12970493
AT5G66760.1	CDY17016	AT1G47420.1	12970493
AT5G66760.1	CDY17074	AT1G47420.1	12970493
AT5G66760.1	CDY17833	AT1G47420.1	12970493
AT5G66760.1	CDX69897	AT4G32210.1	12970493
AT5G66760.1	CDY21589	AT4G32210.1	12970493
AT5G66760.1	CDX69897	AT5G09600.1	12970493
AT5G66760.1	CDY21589	AT5G09600.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53847	Canola	mitochondrion	98.89	99.04
CDY57124	Canola	mitochondrion	98.73	98.88
CDY30754	Canola	mitochondrion	98.73	98.88
CDX81369	Canola	mitochondrion	98.57	98.57
AT5G66760.1	Thale cress	mitochondrion	94.75	93.85
CDX81366	Canola	cytosol, nucleus, peroxisome	10.19	92.75
GSMUA_Achr7P00810_001	Banana	cytosol	87.58	91.82
PGSC0003DMT400038576	Potato	mitochondrion	90.76	90.48
Solyc02g085350.2.1	Tomato	mitochondrion	90.13	89.98
HORVU0Hr1G013850.1	Barley	cytosol	78.5	89.96
EER90804	Sorghum	mitochondrion	88.53	89.68
KXG34367	Sorghum	mitochondrion	87.74	89.01
Zm00001d007966_P001	Maize	mitochondrion	87.74	89.01
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	87.74	88.73
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	87.42	88.69
TraesCS2A01G255100.1	Wheat	plastid	87.42	88.69
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	87.42	88.41
KRH69929	Soybean	mitochondrion	89.17	88.33
KRH76805	Soybean	mitochondrion	88.38	88.1
CDY29234	Canola	mitochondrion	88.69	87.99
TraesCS5D01G420100.1	Wheat	mitochondrion	82.8	87.99
KRH28665	Soybean	mitochondrion	88.22	87.94
CDY36482	Canola	mitochondrion	88.53	87.84
TraesCS2B01G267100.1	Wheat	mitochondrion	79.62	87.57
Os07t0134800-01	Rice	mitochondrion	87.74	87.46
HORVU2Hr1G061040.10	Barley	mitochondrion	73.41	87.15
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	30.25	84.07
VIT_04s0023g01650.t01	Wine grape	mitochondrion	89.65	84.03
Zm00001d018758_P001	Maize	mitochondrion	79.14	79.78
Zm00001d029250_P001	Maize	cytosol	9.08	77.03
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.29	75.0
CDY71819	Canola	mitochondrion, peroxisome, plastid	13.06	58.57
CDY52159	Canola	mitochondrion, nucleus, plastid	15.29	56.47
Zm00001d038502_P001	Maize	cytosol	17.99	51.83
Zm00001d025385_P001	Maize	cytosol	9.71	46.92
CDY53401	Canola	extracellular	9.55	41.96
Zm00001d029316_P001	Maize	cytosol	12.26	39.9
CDY09883	Canola	plastid	29.78	28.81
CDX69560	Canola	cytosol, plastid	29.78	28.81

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	GO:A0A078IK80	UniProt:A0A078IK80	EnsemblPlants:CDY49839
ProteinID:CDY49839	ProteinID:CDY49839.1	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00093908001
InterPro:IPR027477	InterPro:IPR036188	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504
PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46977	SUPFAM:SSF51905
SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816
UniParc:UPI0004EE43F9	SEG:seg	:	:	:	:

Description

BnaC02g43980DSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078IK80]

Coordinates

chrLK032863:+:4176..8809

Molecular Weight (calculated)

69188.9 Da

IEP (calculated)

6.287

GRAVY (calculated)

-0.354

Length

628 amino acids

Sequence
(BLAST)

001: MWRCVSRSLR VPSSRNSSLS GSRFPRFFSS ASQTGDYTIV DHTYDAVVVG AGGAGLRAAI GLSEHGFNTA CITKLFPTRS HTVAAQGGIN AALGNMSEDD
101: WRWHMYDTVK GSDWLGDQDA IQYMCREAPK AVIELENYGL PFSRTEEGKI YQRAFGGQSL DFGKGGQAYR CACAADRTGH ALLHTLYGQA MKHNTQFFVE
201: YFALDLLMAS DGICQGVIAL NMEDGTLHRF RSAQTILATG GYGRAYFSAT SAHTCTGDGN AMVARAGLPL QDLEFVQFHP TGIYGAGCLI TEGSRGEGGI
301: LRNSEGERFM ERYAPTAKDL ASRDVVSRSM TMEIREGRGV GPHKDHIYLH LNHLPPEVLK ERLPGISETA AIFAGVDVTK EPIPVLPTVH YNMGGIPTNY
401: HGEVVTIKGD DPDAVVPGLM AAGEAACASV HGANRLGANS LLDIVVFGRA CANRVAEISK PGEKQRPLEE NAGKKTIEWL NKLRHSSGSL PTSSIRLNMQ
501: RIMQNNAAVF RTQETLEEGC QLIDKAWESF EDVQVKDRSL IWNSDLIETI ELENLLINAS ITMHSAEARK ESRGAHARED FTKREDGEWM KHTLGYWEDE
601: KVRLEYRPVH MDTLDDEIDT FPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.