CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31640_001	Banana	mitochondrion	41.26	12.39
KXG35242	Sorghum	cytosol, mitochondrion, plastid	4.9	11.67
CDY30754	Canola	mitochondrion	42.66	9.73
CDY53847	Canola	mitochondrion	42.66	9.73
CDY57124	Canola	mitochondrion	41.96	9.57
CDX81369	Canola	mitochondrion	41.96	9.55
CDY49839	Canola	mitochondrion	41.96	9.55
CDY29234	Canola	mitochondrion	41.26	9.32
CDY36482	Canola	mitochondrion	41.26	9.32
CDY09883	Canola	plastid	14.69	3.24
CDX69560	Canola	cytosol, plastid	14.69	3.24
VIT_13s0064g01420.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.7	2.38
KRH75678	Soybean	plastid	0.7	0.62
CDY52159	Canola	mitochondrion, nucleus, plastid	0.0	0.0
GSMUA_Achr6P31630_001	Banana	cytosol, mitochondrion, peroxisome	0.0	0.0
CDY71819	Canola	mitochondrion, peroxisome, plastid	0.0	0.0
CDX81366	Canola	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:CDY53401	EnsemblPlantsGene:GSBRNA2T00010623001	Gene3D:3.50.50.60	GO:A0A078IU71	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF00890	ProteinID:CDY53401	ProteinID:CDY53401.1
UniParc:UPI0004EEF14B	UniProt:A0A078IU71	MapMan:35.1	:	:	:

Description

BnaCnng25040DBnaCnng25040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU71]

Coordinates

chrLK033197:+:13671..14268

Molecular Weight (calculated)

17149.5 Da

IEP (calculated)

4.928

GRAVY (calculated)

-0.109

Length

143 amino acids

Sequence
(BLAST)

001: MYWRDQGRFF THFIALSEKN CFFLLLFPHV AARRFDHCGF EFVSFFLNRL EIDTNTKKNE QYVYVAAQGG INDALGNMSE DDWRWHMYEY DRVKGWDWLV
101: ILLLLATFCD QDDIQYMCRD APKAVIELEN YCLPFSRIVW LCG

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.