CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g01420.t01	Wine grape	cytosol, mitochondrion, peroxisome	28.99	47.62
GSMUA_Achr6P31630_001	Banana	cytosol, mitochondrion, peroxisome	82.61	43.85
CDY57124	Canola	mitochondrion	94.2	10.37
CDX81369	Canola	mitochondrion	94.2	10.35
CDY30754	Canola	mitochondrion	92.75	10.21
CDY53847	Canola	mitochondrion	92.75	10.21
CDY49839	Canola	mitochondrion	92.75	10.19
CDY29234	Canola	mitochondrion	81.16	8.85
CDY36482	Canola	mitochondrion	81.16	8.85
CDX69560	Canola	cytosol, plastid	18.84	2.0
CDY09883	Canola	plastid	18.84	2.0
CDY52159	Canola	mitochondrion, nucleus, plastid	2.9	1.18
CDY71819	Canola	mitochondrion, peroxisome, plastid	1.45	0.71
CDY53401	Canola	extracellular	0.0	0.0
GSMUA_Achr6P31640_001	Banana	mitochondrion	0.0	0.0
KXG35242	Sorghum	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX81366	EnsemblPlantsGene:GSBRNA2T00134924001	Gene3D:1.20.58.100	Gene3D:4.10.80.40	GO:A0A078CW66	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF02910	ProteinID:CDX81366	ProteinID:CDX81366.1
SUPFAM:SSF46977	UniParc:UPI0004EE1138	MapMan:35.1	:	:	:

Description

BnaC09g07770D

Coordinates

chrLK031824:-:1254857..1258918

Molecular Weight (calculated)

8423.8 Da

IEP (calculated)

6.099

GRAVY (calculated)

-1.378

Length

69 amino acids

Sequence
(BLAST)

1: MHSAEARKES RGAHAREDFT KREDGEWMRH TLGYWEDEKV RLEYRPYRPV HMDTLDDEIE TFPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.