CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024466.1-P	Field mustard	mitochondrion	99.53	99.68
CDY36482	Canola	mitochondrion	98.89	98.89
GSMUA_Achr7P00810_001	Banana	cytosol	86.1	90.98
AT2G18450.1	Thale cress	mitochondrion	90.52	90.66
CDY57124	Canola	mitochondrion	87.99	88.84
CDY30754	Canola	mitochondrion	87.99	88.84
CDY49839	Canola	mitochondrion	87.99	88.69
CDY53847	Canola	mitochondrion	87.84	88.68
CDX81369	Canola	mitochondrion	87.84	88.53
PGSC0003DMT400038576	Potato	mitochondrion	87.52	87.94
Solyc02g085350.2.1	Tomato	mitochondrion	87.2	87.76
HORVU0Hr1G013850.1	Barley	cytosol	75.51	87.23
EER90804	Sorghum	mitochondrion	84.99	86.77
KXG34367	Sorghum	mitochondrion	84.68	86.59
Os07t0134800-01	Rice	mitochondrion	86.1	86.51
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	84.83	86.47
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	84.83	86.47
Zm00001d007966_P001	Maize	mitochondrion	84.52	86.43
KRH69929	Soybean	mitochondrion	86.41	86.28
TraesCS5D01G420100.1	Wheat	mitochondrion	80.41	86.13
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	83.89	85.78
TraesCS2A01G255100.1	Wheat	plastid	83.57	85.46
KRH76805	Soybean	mitochondrion	84.52	84.92
KRH28665	Soybean	mitochondrion	84.52	84.92
HORVU2Hr1G061040.10	Barley	mitochondrion	70.3	84.12
TraesCS2B01G267100.1	Wheat	mitochondrion	75.67	83.89
VIT_04s0023g01650.t01	Wine grape	mitochondrion	86.89	82.09
CDX81366	Canola	cytosol, nucleus, peroxisome	8.85	81.16
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	28.75	80.53
Zm00001d018758_P001	Maize	mitochondrion	76.46	77.69
Zm00001d029250_P001	Maize	cytosol	8.69	74.32
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	13.74	67.97
CDY71819	Canola	mitochondrion, peroxisome, plastid	12.01	54.29
CDY52159	Canola	mitochondrion, nucleus, plastid	13.27	49.41
Zm00001d038502_P001	Maize	cytosol	16.43	47.71
Zm00001d025385_P001	Maize	cytosol	8.85	43.08
CDY53401	Canola	extracellular	9.32	41.26
Zm00001d029316_P001	Maize	cytosol	11.85	38.86
CDY09883	Canola	plastid	28.75	28.04
CDX69560	Canola	cytosol, plastid	28.75	28.04

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	GO:A0A078GVQ2	UniProt:A0A078GVQ2	EnsemblPlants:CDY29234
ProteinID:CDY29234	ProteinID:CDY29234.1	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00042162001
InterPro:IPR027477	InterPro:IPR036188	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504
PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46977	SUPFAM:SSF51905
SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816
UniParc:UPI0004EE7E09	SEG:seg	:	:	:	:

Description

BnaA06g25230DSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078GVQ2]

Coordinates

chrLK032233:-:414208..418471

Molecular Weight (calculated)

69684.4 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.361

Length

633 amino acids

Sequence
(BLAST)

001: MWRFVSRRVR AASRRSESDG ALISSQVSTR FFSARSTTGD YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: TEDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLDFGKGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFTLDL IMNSDAGTCQ GVIALNMEDG TLHRFHAGSM ILATGGYGRA YFSATSAHTC TGDGNAMVAR AGLPLQDLEF VQFHPTGIYG AGCLITEGAR
301: GEGGILRNSE GEKFMDRYAP TARDLASRDV VSRSMTMEIR EGRGAGPMKD HIYLHLNHLP PDVLKERLPG ISETAAIFAG VDVTREPIPV LPTVHYNMGG
401: IPTNYHGEVI TVRGDDPDSI VPGLMAAGEA ASASVHGANR LGANSLLDIV VFGRACANRV AEIQKPGEKL RPLENDAGEK SIEWLHRLRN SNGSLPTSKI
501: RLNMQRVMQN NAAVFRTQET LEEGCDLIDK TWDSFGDVKV KDKSLIWNSD LVETMELENL LINACITMHS AEARKESRGA HAREDFTKRD DENWMKHTLG
601: YWEEGKVKLE YRPVHMNTLD DEVDTFPPKA RVY

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.