CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71819	Canola	mitochondrion, peroxisome, plastid	44.12	53.57
CDY30754	Canola	mitochondrion	56.47	15.31
CDY53847	Canola	mitochondrion	56.47	15.31
CDY57124	Canola	mitochondrion	56.47	15.31
CDX81369	Canola	mitochondrion	56.47	15.29
CDY49839	Canola	mitochondrion	56.47	15.29
CDY29234	Canola	mitochondrion	49.41	13.27
CDY36482	Canola	mitochondrion	49.41	13.27
TraesCS5A01G077100.1	Wheat	plasma membrane, plastid, vacuole	11.76	10.47
CDY09883	Canola	plastid	16.47	4.31
CDX69560	Canola	cytosol, plastid	15.88	4.16
CDX81366	Canola	cytosol, nucleus, peroxisome	1.18	2.9
CDY53401	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY52159	EnsemblPlantsGene:GSBRNA2T00004992001	Gene3D:3.50.50.60	Gene3D:3.90.700.10	GO:A0A078IRT2	InterPro:FAD/NAD-bd_sf
InterPro:IPR027477	InterPro:IPR036188	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	ProteinID:CDY52159
ProteinID:CDY52159.1	SEG:seg	SUPFAM:SSF56425	UniParc:UPI0004EE024C	UniProt:A0A078IRT2	MapMan:35.1

Description

BnaA02g34680DBnaA02g34680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRT2]

Coordinates

chrLK033060:-:55773..56727

Molecular Weight (calculated)

19100.1 Da

IEP (calculated)

11.048

GRAVY (calculated)

-0.350

Length

170 amino acids

Sequence
(BLAST)

001: MERYAPTAKD LASRDVVSRS VTIEIREGRG VGSYLSPFES SSTRSSERKA SRRQLQFLLV LMSPKSQFQS CPLFTTTWVV SQRREWIMRC IKASLGANSL
101: LDILVFGRAC ANRVAEISKP GETLEENAGK KIIEWLNKLR HSSGSLPTSS IRLNMQLSSA PKKHWKKVVS

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.