Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G255100.1 | Wheat | plastid | 50.79 | 15.67 |
| TraesCS5A01G411200.1 | Wheat | golgi, mitochondrion | 50.79 | 15.62 |
| CDY71819 | Canola | mitochondrion, peroxisome, plastid | 10.47 | 14.29 |
| CDY52159 | Canola | mitochondrion, nucleus, plastid | 10.47 | 11.76 |
| TraesCS6A01G099200.1 | Wheat | mitochondrion, plastid | 28.8 | 8.58 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G077100.1 | EnsemblPlantsGene:TraesCS5A01G077100 | Gene3D:3.90.700.10 | InterPro:FAD-binding_2 | InterPro:IPR027477 | InterPro:Succ_DH/fumarate_Rdtase_cat_sf |
| PANTHER:PTHR11632 | PANTHER:PTHR11632:SF51 | PFAM:PF00890 | SEG:seg | SUPFAM:SSF56425 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5A:+:93197119..93200887
Molecular Weight (calculated)
21101.3 Da
IEP (calculated)
8.586
GRAVY (calculated)
-0.107
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGVVQLSVR IQISPPCYIS PSTETVFLLL FFLFTTKLMQ MLLVKGLETG SSSGRFFEKF QVLGNCKLFQ PGGNCTQHGG WYPSSFPFNK CYFSNRTQHG
101: YGRGYFSAIS SHTCTSDDNA MVARAGLPLQ DLEFVQFHPT GIYGAGCLIT EGSRGEGGIL RNSKAERFME RYAPTANDLA SRDVVSRSMT N
101: YGRGYFSAIS SHTCTSDDNA MVARAGLPLQ DLEFVQFHPT GIYGAGCLIT EGSRGEGGIL RNSKAERFME RYAPTANDLA SRDVVSRSMT N
001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY
Arabidopsis Description
SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.