CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome, plastid
Any Predictor:	mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52159	Canola	mitochondrion, nucleus, plastid	53.57	44.12
CDY30754	Canola	mitochondrion	58.57	13.08
CDY53847	Canola	mitochondrion	58.57	13.08
CDY57124	Canola	mitochondrion	58.57	13.08
CDX81369	Canola	mitochondrion	58.57	13.06
CDY49839	Canola	mitochondrion	58.57	13.06
CDY29234	Canola	mitochondrion	54.29	12.01
CDY36482	Canola	mitochondrion	54.29	12.01
TraesCS5A01G077100.1	Wheat	plasma membrane, plastid, vacuole	14.29	10.47
CDY09883	Canola	plastid	26.43	5.7
CDX69560	Canola	cytosol, plastid	25.71	5.55
CDX81366	Canola	cytosol, nucleus, peroxisome	0.71	1.45
CDY53401	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71819	EnsemblPlantsGene:GSBRNA2T00020518001	Gene3D:3.50.50.60	Gene3D:3.90.700.10	GO:A0A078JYS2	InterPro:FAD-binding_2
InterPro:FAD/NAD-bd_sf	InterPro:IPR027477	InterPro:IPR036188	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
PFAM:PF00890	ProteinID:CDY71819	ProteinID:CDY71819.1	SEG:seg	SUPFAM:SSF51905	SUPFAM:SSF56425
UniParc:UPI0004EF0014	UniProt:A0A078JYS2	MapMan:35.1	:	:	:

Description

BnaAnng38880DBnaAnng38880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYS2]

Coordinates

chrLK047656:+:517..1505

Molecular Weight (calculated)

15235.3 Da

IEP (calculated)

10.817

GRAVY (calculated)

-0.094

Length

140 amino acids

Sequence
(BLAST)

001: MERYAPTAKD LASRDVVSRS VTIEIREGRG VGSYLSPFES SSTRSSERKA SRRQLQFLLV LMSPKSQFQS CPLFTTTWVV SQRRDAVVPG LMAAGEAACA
101: SVHGANRLGA NSLLDILVFG RACANRVAEI SKPGQSFLRI

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.