Factsheet for HORVU2Hr1G061040.10

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G057270.1
HORVU7Hr1G012370.2
HORVU7Hr1G074890.6
HORVU7Hr1G076300.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	HORVU7Hr1G076300.3	AT1G08480.1	12970493
AT5G66760.1	HORVU7Hr1G012370.2	AT1G47420.1	12970493
AT5G66760.1	HORVU5Hr1G057270.1	AT3G27380.1	12970493
AT5G66760.1	HORVU7Hr1G074890.6	AT3G27380.1	12970493
AT5G66760.1	HORVU5Hr1G057270.1	AT5G40650.1	12970493
AT5G66760.1	HORVU7Hr1G074890.6	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	37.24	87.17
TraesCS2A01G255100.1	Wheat	plastid	96.03	82.07
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	95.84	81.91
TraesCS2B01G267100.1	Wheat	mitochondrion	86.2	79.86
GSMUA_Achr7P00810_001	Banana	cytosol	87.71	77.46
Zm00001d029250_P001	Maize	cytosol	10.78	77.03
HORVU0Hr1G013850.1	Barley	cytosol	79.77	77.01
Os07t0134800-01	Rice	mitochondrion	91.49	76.83
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	18.34	75.78
Solyc02g085350.2.1	Tomato	mitochondrion	87.9	73.93
Bra012100.1-P	Field mustard	mitochondrion	87.15	73.88
PGSC0003DMT400038576	Potato	mitochondrion	87.9	73.81
CDY57124	Canola	mitochondrion	87.33	73.68
AT5G66760.1	Thale cress	mitochondrion	88.28	73.66
CDY53847	Canola	mitochondrion	87.15	73.52
CDY30754	Canola	mitochondrion	87.15	73.52
CDY49839	Canola	mitochondrion	87.15	73.41
CDX81369	Canola	mitochondrion	87.15	73.41
KRH28665	Soybean	mitochondrion	85.82	72.06
KRH76805	Soybean	mitochondrion	85.82	72.06
KRH69929	Soybean	mitochondrion	86.01	71.77
Bra024466.1-P	Field mustard	mitochondrion	84.5	70.73
CDY36482	Canola	mitochondrion	84.31	70.46
CDY29234	Canola	mitochondrion	84.12	70.3
AT2G18450.1	Thale cress	mitochondrion	83.36	69.78
VIT_04s0023g01650.t01	Wine grape	mitochondrion	87.52	69.1
Zm00001d038502_P001	Maize	cytosol	21.55	52.29
Zm00001d029316_P001	Maize	cytosol	14.93	40.93
HORVU6Hr1G017860.12	Barley	plastid	30.43	24.92
HORVU2Hr1G061080.1	Barley	cytosol, peroxisome	0.19	0.91

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	UniProt:A0A287I5I6	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G061040
EnsemblPlants:HORVU2Hr1G061040.10	InterPro:IPR027477	InterPro:IPR036188	PFAM:PF00890	PIRSF:PIRSF000171	ScanProsite:PS00504
PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf
InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI000B46A30C	SEG:seg

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A287I5I6]

Coordinates

chrchr2H:+:408971990..408977178

Molecular Weight (calculated)

56280.9 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.210

Length

529 amino acids

Sequence
(BLAST)

001: MWRGCVSRGL SKAKASASRL FSTTSSSYTV VDHSYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMSED DWRWHMYDTV
101: KGSDWLGDQD SIQYMCREAP KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HAMLHTLYGQ AMKHNTQFFV EYFALDLLMD
201: NEGNCQGVIA LNMEDGTLHR FRATNTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG ILRNSEGERF
301: MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPEVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN YHGEVVDIKG
401: DNPDTVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVAEIS KPGDKQKPLE KGAGEKTIAW LDKLRNANGS LPTSKIRLNT QRIMQNNAAV
501: FRTQETLEEG XXXXXXXXXS FSFFFLFIL

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.