Factsheet for Zm00001d014927_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029250_P001	Maize	cytosol	42.19	72.97
Zm00001d038502_P001	Maize	cytosol	89.06	52.29
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	63.28	35.84
Zm00001d029316_P001	Maize	cytosol	45.31	30.05
Zm00001d025385_P001	Maize	cytosol	25.0	24.62
HORVU2Hr1G061040.10	Barley	mitochondrion	75.78	18.34
TraesCS2B01G267100.1	Wheat	mitochondrion	77.34	17.34
Zm00001d007966_P001	Maize	mitochondrion	77.34	15.99
TraesCS2A01G255100.1	Wheat	plastid	77.34	15.99
Zm00001d018758_P001	Maize	mitochondrion	77.34	15.89
GSMUA_Achr7P00810_001	Banana	cytosol	74.22	15.86
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	76.56	15.83
CDY30754	Canola	mitochondrion	75.0	15.31
CDY53847	Canola	mitochondrion	75.0	15.31
CDY57124	Canola	mitochondrion	75.0	15.31
AT5G66760.1	Thale cress	mitochondrion	75.78	15.3
CDY49839	Canola	mitochondrion	75.0	15.29
Os07t0134800-01	Rice	mitochondrion	75.0	15.24
PGSC0003DMT400038576	Potato	mitochondrion	75.0	15.24
KRH28665	Soybean	mitochondrion	75.0	15.24
Bra012100.1-P	Field mustard	mitochondrion	74.22	15.22
CDX81369	Canola	mitochondrion	74.22	15.13
Solyc02g085350.2.1	Tomato	mitochondrion	74.22	15.1
KRH76805	Soybean	mitochondrion	74.22	15.08
KRH69929	Soybean	mitochondrion	73.44	14.83
VIT_04s0023g01650.t01	Wine grape	mitochondrion	74.22	14.18
AT2G18450.1	Thale cress	mitochondrion	68.75	13.92
Bra024466.1-P	Field mustard	mitochondrion	67.97	13.77
CDY29234	Canola	mitochondrion	67.97	13.74
CDY36482	Canola	mitochondrion	67.19	13.59
Zm00001d015183_P002	Maize	plastid	27.34	5.24

Protein Annotations

EnsemblPlants:Zm00001d014927_P001	EnsemblPlants:Zm00001d014927_T001	EnsemblPlantsGene:Zm00001d014927	Gene3D:3.50.50.60	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf
InterPro:IPR027477	InterPro:IPR036188	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF00890
ProteinID:AQK67650.1	SUPFAM:SSF51905	SUPFAM:SSF56425	UniParc:UPI00084398F6	UniProt:A0A1D6GXW7	MapMan:35.1

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 mitochondrial

Coordinates

chr5:-:68756786..68757927

Molecular Weight (calculated)

13824.8 Da

IEP (calculated)

5.978

GRAVY (calculated)

-0.055

Length

128 amino acids

Sequence
(BLAST)

001: MTKNLCPVLV VSPGSRGEGG ILRNSEGPLK DHIYLHQNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG GIPTNYHKEV VDIKGDNPDA
101: VIPGLMAAGE VACAAPRWWM IDRPVVCD

Best Arabidopsis Sequence Match ( AT5G17180.1 )
(BLAST)

001: MANAKDVKDF KETFQRFDQY VNGEIPWREF DMTGVRKRST PMTKSEIDTI FVELGTRGED RVFRDSKFSG NPLQASVSLK HKPKDVINVV QKESCLYNSD
101: NDEKKTENQL QIPKKVSRKY SER

Arabidopsis Description

At5g17180 [Source:UniProtKB/TrEMBL;Acc:Q9FFJ1]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.