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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 22160430
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G298400.1
TraesCS2B01G314900.1
TraesCS2D01G296500.1
TraesCS4A01G418100.1
TraesCS7A01G314000.1
TraesCS7A01G319300.1
TraesCS7B01G214900.1
TraesCS7B01G220100.1
TraesCS7D01G064400.1
TraesCS7D01G311200.1
TraesCS7D01G315800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66760.1 TraesCS7A01G319300.1 AT1G08480.1 12970493
AT5G66760.1 TraesCS7B01G220100.1 AT1G08480.1 12970493
AT5G66760.1 TraesCS7D01G315800.1 AT1G08480.1 12970493
AT5G66760.1 TraesCS2A01G298400.1 AT1G47420.1 12970493
AT5G66760.1 TraesCS2B01G314900.1 AT1G47420.1 12970493
AT5G66760.1 TraesCS2D01G296500.1 AT1G47420.1 12970493
AT5G66760.1 TraesCS4A01G418100.1 AT1G47420.1 12970493
AT5G66760.1 TraesCS7D01G064400.1 AT1G47420.1 12970493
AT5G66760.1 TraesCS7A01G314000.1 AT3G27380.1 12970493
AT5G66760.1 TraesCS7B01G214900.1 AT3G27380.1 12970493
AT5G66760.1 TraesCS7D01G311200.1 AT3G27380.1 12970493
AT5G66760.1 TraesCS7A01G314000.1 AT5G40650.1 12970493
AT5G66760.1 TraesCS7B01G214900.1 AT5G40650.1 12970493
AT5G66760.1 TraesCS7D01G311200.1 AT5G40650.1 12970493
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G255100.1 Wheat plastid 99.19 99.19
TraesCS2B01G267100.1 Wheat mitochondrion 90.95 98.6
HORVU2Hr1G061040.10 Barley mitochondrion 81.91 95.84
GSMUA_Achr7P00810_001 Banana cytosol 90.15 93.16
Os07t0134800-01 Rice mitochondrion 94.35 92.7
TraesCS5D01G420100.1 Wheat mitochondrion 87.88 92.05
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 32.31 88.5
Solyc02g085350.2.1 Tomato mitochondrion 89.5 88.08
CDY57124 Canola mitochondrion 89.01 87.88
PGSC0003DMT400038576 Potato mitochondrion 89.34 87.78
Bra012100.1-P Field mustard mitochondrion 88.37 87.66
CDX81369 Canola mitochondrion 88.85 87.58
CDY53847 Canola mitochondrion 88.69 87.56
CDY30754 Canola mitochondrion 88.69 87.56
CDY49839 Canola mitochondrion 88.69 87.42
AT5G66760.1 Thale cress mitochondrion 89.34 87.22
KRH69929 Soybean mitochondrion 88.85 86.75
KRH76805 Soybean mitochondrion 87.88 86.35
KRH28665 Soybean mitochondrion 87.88 86.35
Bra024466.1-P Field mustard mitochondrion 86.11 84.34
CDY36482 Canola mitochondrion 85.95 84.04
CDY29234 Canola mitochondrion 85.78 83.89
AT2G18450.1 Thale cress mitochondrion 84.17 82.44
VIT_04s0023g01650.t01 Wine grape mitochondrion 89.18 82.39
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 15.83 76.56
Zm00001d029250_P001 Maize cytosol 9.05 75.68
Zm00001d038502_P001 Maize cytosol 18.58 52.75
Zm00001d025385_P001 Maize cytosol 10.18 48.46
Zm00001d029316_P001 Maize cytosol 12.6 40.41
TraesCS6D01G083200.1 Wheat plastid 29.73 28.71
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100MapMan:2.3.6.1.1
Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40InterPro:FAD-binding_2InterPro:FAD/NAD-bd_sfInterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491
GO:GO:0016627GO:GO:0022900GO:GO:0050660GO:GO:0055114InterPro:IPR027477InterPro:IPR036188
PFAM:PF00890PFAM:PF02910PIRSF:PIRSF000171ScanProsite:PS00504PANTHER:PTHR11632PANTHER:PTHR11632:SF51
SUPFAM:SSF46977SUPFAM:SSF51905SUPFAM:SSF56425InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwdInterPro:Succ_Dhase_FrdA_Gneg
TIGRFAMs:TIGR01812TIGRFAMs:TIGR01816EnsemblPlantsGene:TraesCS2D01G255500EnsemblPlants:TraesCS2D01G255500.1SEG:seg:
Description
No Description!
Coordinates
chr2D:+:308470955..308480406
Molecular Weight (calculated)
67960.6 Da
IEP (calculated)
6.759
GRAVY (calculated)
-0.347
Length
619 amino acids
Sequence
(BLAST)
001: MWRGCVSRGL SKAKASASRL FSTTSSSYTV VDHSYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMSED DWRWHMYDTV
101: KGSDWLGDQD SIQYMCREAP KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HAMLHTLYGQ AMKHNTQFFV EYFALDLLMD
201: NEGNCQGVIA LNMEDGTLHR FRAKNTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG ILRNSEGERF
301: MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPKVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN YHGEVVDIKG
401: DNPDTVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVAEIS KPGDKQKPLE KGAGEKTIAW LDKLRNANGS LPTSKIRLNT QRIMQNNAAV
501: FRTQETLEEG CQLISKAWES YHDVKISDQS LIWNSDLIET IELENLLINA CITMYSAEAR KESRGAHARE DFTTRDDERW MKHSLGYWEN EKVRLAYRPV
601: HMNTLDDEIE SFPPKARVY
Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.