Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014927_P001 | Maize | cytosol, mitochondrion, peroxisome | 52.29 | 89.06 |
| Zm00001d029250_P001 | Maize | cytosol | 25.23 | 74.32 |
| Zm00001d008855_P001 | Maize | cytosol, mitochondrion, peroxisome | 37.61 | 36.28 |
| Zm00001d029316_P001 | Maize | cytosol | 29.36 | 33.16 |
| Zm00001d025385_P001 | Maize | cytosol | 15.6 | 26.15 |
| HORVU2Hr1G061040.10 | Barley | mitochondrion | 52.29 | 21.55 |
| TraesCS2B01G267100.1 | Wheat | mitochondrion | 50.92 | 19.44 |
| Zm00001d007966_P001 | Maize | mitochondrion | 53.67 | 18.9 |
| TraesCS2A01G255100.1 | Wheat | plastid | 53.21 | 18.74 |
| GSMUA_Achr7P00810_001 | Banana | cytosol | 51.38 | 18.7 |
| Zm00001d018758_P001 | Maize | mitochondrion | 53.21 | 18.62 |
| TraesCS2D01G255500.1 | Wheat | mitochondrion, plastid | 52.75 | 18.58 |
| AT5G66760.1 | Thale cress | mitochondrion | 52.75 | 18.14 |
| CDY57124 | Canola | mitochondrion | 51.83 | 18.02 |
| CDY53847 | Canola | mitochondrion | 51.83 | 18.02 |
| CDY30754 | Canola | mitochondrion | 51.83 | 18.02 |
| CDY49839 | Canola | mitochondrion | 51.83 | 17.99 |
| Bra012100.1-P | Field mustard | mitochondrion | 51.38 | 17.95 |
| Os07t0134800-01 | Rice | mitochondrion | 51.83 | 17.94 |
| PGSC0003DMT400038576 | Potato | mitochondrion | 51.83 | 17.94 |
| CDX81369 | Canola | mitochondrion | 51.38 | 17.83 |
| Solyc02g085350.2.1 | Tomato | mitochondrion | 51.38 | 17.81 |
| KRH28665 | Soybean | mitochondrion | 51.38 | 17.78 |
| KRH76805 | Soybean | mitochondrion | 50.92 | 17.62 |
| KRH69929 | Soybean | mitochondrion | 50.92 | 17.51 |
| VIT_04s0023g01650.t01 | Wine grape | mitochondrion | 51.38 | 16.72 |
| AT2G18450.1 | Thale cress | mitochondrion | 48.17 | 16.61 |
| Bra024466.1-P | Field mustard | mitochondrion | 47.71 | 16.46 |
| CDY29234 | Canola | mitochondrion | 47.71 | 16.43 |
| CDY36482 | Canola | mitochondrion | 47.25 | 16.27 |
| Zm00001d015183_P002 | Maize | plastid | 24.31 | 7.93 |
Protein Annotations
| EntrezGene:103630508 | Gene3D:3.40.850.10 | Gene3D:3.50.50.60 | MapMan:35.1 | UniProt:A0A1D6M6S0 | ProteinID:AQK86768.1 |
| InterPro:FAD-binding_2 | InterPro:FAD/NAD-bd_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003777 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0007018 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR001752 | InterPro:IPR027477 | InterPro:IPR036188 |
| InterPro:IPR036961 | InterPro:Kinesin_motor_dom | InterPro:Kinesin_motor_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00890 | PFAM:PF16796 |
| PFscan:PS50067 | PANTHER:PTHR11632 | PANTHER:PTHR11632:SF51 | SUPFAM:SSF52540 | SUPFAM:SSF56425 | InterPro:Succ_DH/fumarate_Rdtase_cat_sf |
| UniParc:UPI0004DEABA3 | InterPro:Vik1/Cik1_MT-bd | EnsemblPlantsGene:Zm00001d038502 | EnsemblPlants:Zm00001d038502_P001 | EnsemblPlants:Zm00001d038502_T001 | SEG:seg |
Description
succinate dehydrogenase9 succinate dehydrogenase9
Coordinates
chr6:+:158757903..158759244
Molecular Weight (calculated)
24619.3 Da
IEP (calculated)
5.867
GRAVY (calculated)
-0.594
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MERYKKQVVK CSEECEPRYN GLKKKYTDEC AERRRLYNEL IELRGNIRVF CRCRPLSSDE VNHGCLSVVE IDPSHETELQ FVPSEKERKP FKFDHVSGPE
101: DDQGSRGEGG ILRNSEGPLK DHIYLHQNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG GIPTNYHKEV VDIKGDNPDA VIPGLMAAGE
201: AACAAPRWWM IDRPVVCD
101: DDQGSRGEGG ILRNSEGPLK DHIYLHQNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG GIPTNYHKEV VDIKGDNPDA VIPGLMAAGE
201: AACAAPRWWM IDRPVVCD
001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY
Arabidopsis Description
SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.