Factsheet for GSMUA_Achr7P00810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr6P18420_001
GSMUA_Achr6P25260_001
GSMUA_Achr6P25290_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	GSMUA_Achr10P...	AT1G08480.1	12970493
AT5G66760.1	GSMUA_Achr6P18420_001	AT1G08480.1	12970493
AT5G66760.1	GSMUA_Achr10P...	AT1G47420.1	12970493
AT5G66760.1	GSMUA_Achr6P25260_001	AT1G47420.1	12970493
AT5G66760.1	GSMUA_Achr6P25290_001	AT1G47420.1	12970493
AT5G66760.1	GSMUA_Achr10P...	AT3G27380.1	12970493
AT5G66760.1	GSMUA_AchrUn_...	AT4G32210.1	12970493
AT5G66760.1	GSMUA_AchrUn_...	AT5G09600.1	12970493
AT5G66760.1	GSMUA_Achr10P...	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31630_001	Banana	cytosol, mitochondrion, peroxisome	20.2	93.08
EER90804	Sorghum	mitochondrion	94.32	91.13
HORVU0Hr1G013850.1	Barley	cytosol	83.31	91.06
KXG34367	Sorghum	mitochondrion	93.99	90.95
Zm00001d007966_P001	Maize	mitochondrion	93.66	90.63
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	93.16	90.15
TraesCS2A01G255100.1	Wheat	plastid	92.99	89.98
Os07t0134800-01	Rice	mitochondrion	93.82	89.21
TraesCS2B01G267100.1	Wheat	mitochondrion	84.47	88.62
PGSC0003DMT400038576	Potato	mitochondrion	93.16	88.57
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	91.82	88.57
Solyc02g085350.2.1	Tomato	mitochondrion	92.99	88.55
KRH69929	Soybean	mitochondrion	93.49	88.33
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	91.49	88.24
CDY57124	Canola	mitochondrion	92.15	88.04
TraesCS5D01G420100.1	Wheat	mitochondrion	86.81	87.99
CDY30754	Canola	mitochondrion	91.99	87.88
CDY53847	Canola	mitochondrion	91.99	87.88
Bra012100.1-P	Field mustard	mitochondrion	91.49	87.82
GSMUA_Achr6P31640_001	Banana	mitochondrion	69.78	87.82
CDX81369	Canola	mitochondrion	91.99	87.74
HORVU2Hr1G061040.10	Barley	mitochondrion	77.46	87.71
CDY49839	Canola	mitochondrion	91.82	87.58
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	32.89	87.17
AT5G66760.1	Thale cress	mitochondrion	92.15	87.07
KRH76805	Soybean	mitochondrion	91.49	86.98
KRH28665	Soybean	mitochondrion	91.49	86.98
Bra024466.1-P	Field mustard	mitochondrion	91.32	86.55
CDY29234	Canola	mitochondrion	90.98	86.1
CDY36482	Canola	mitochondrion	90.82	85.94
AT2G18450.1	Thale cress	mitochondrion	89.98	85.28
VIT_04s0023g01650.t01	Wine grape	mitochondrion	92.82	82.99
Zm00001d018758_P001	Maize	mitochondrion	85.14	81.86
Zm00001d029250_P001	Maize	cytosol	9.35	75.68
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.86	74.22
Zm00001d038502_P001	Maize	cytosol	18.7	51.38
Zm00001d025385_P001	Maize	cytosol	10.02	46.15
Zm00001d029316_P001	Maize	cytosol	13.02	40.41
GSMUA_Achr10P...	Banana	plastid	30.38	30.43

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr7G00810_001	EnsemblPlants:GSMUA_Achr7P00810_001	EnsemblPlants:GSMUA_Achr7T00810_001	InterPro:IPR027477	InterPro:IPR036188	UniProt:M0TDM1
PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg
TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI000295F028	SEG:seg	:	:

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr7G00810_001]

Coordinates

chr7:-:657473..665200

Molecular Weight (calculated)

65804.1 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.332

Length

599 amino acids

Sequence
(BLAST)

001: MKVGRSSYTI VDHTYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMSED DWRWHMYDTV KGSDWLGDQD SIQYMCREAP
101: KAVIELENYG LPFSRTEDGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HALLHTLYGQ AMKHNTQFFV EYFALDLLMD SKGTCQGVIA LNMEDGTLHR
201: FHAANTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LEDLEFVQFH PTGIYGAGCL ITEGSRGEGG ILRNSEGERF MERYAPTAKD LASRDVVSRS
301: MTMEIREGRG VGPLKDHIYL HLNHLPPDVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN YHGEVVHIEG DDPDAVVPGL MAAGEAACAS
401: VHGANRLGAN SLLDIVVFGR ACANRVAEIC KPGEKQKPLE KDAGEKTIAW LDKLRNSNGS LPTSKIRLNM QRVMQNNAAV FRTQETLEEG CQLIDKAWES
501: FHDVKIHDRS LIWNSDLIET VELENLLINA CITMHSAEAR KESRGAHARE DFTKRDDEKW LKHTLGYWEN GKVKLTYRPV HMNTLDDEVE SFPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.